Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1538 | 3' | -55.9 | NC_001347.2 | + | 19388 | 0.7 | 0.842376 |
Target: 5'- cCCGCGGACacacgcugaaacagGUCCCCaUCCCCGAa-- -3' miRNA: 3'- -GGCGUUUGa-------------CAGGGGcAGGGGUUgca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 27153 | 0.67 | 0.952241 |
Target: 5'- gCCGUuuuGCUGUCCUCGUCCgggUCuACGc -3' miRNA: 3'- -GGCGuu-UGACAGGGGCAGG---GGuUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 29286 | 0.66 | 0.96615 |
Target: 5'- gUCGCAAaacgcuACUGgCUCCGggacuaucguguUCCCCAACGc -3' miRNA: 3'- -GGCGUU------UGACaGGGGC------------AGGGGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 34681 | 0.69 | 0.862053 |
Target: 5'- cUCGCGGACUcGgugCCCCGgCCCCugGAUGUg -3' miRNA: 3'- -GGCGUUUGA-Ca--GGGGCaGGGG--UUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 37538 | 0.72 | 0.734231 |
Target: 5'- -gGUcgGCUGUCCCCGaggaCCCAAUGUg -3' miRNA: 3'- ggCGuuUGACAGGGGCag--GGGUUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 38443 | 0.72 | 0.762141 |
Target: 5'- cCCGCc-GCcGUCCCCGUCgCCGGCc- -3' miRNA: 3'- -GGCGuuUGaCAGGGGCAGgGGUUGca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 41132 | 0.71 | 0.789089 |
Target: 5'- gCGCAGcACUcGgcuaCCCCGUCCCCcGCGc -3' miRNA: 3'- gGCGUU-UGA-Ca---GGGGCAGGGGuUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 62597 | 0.66 | 0.959606 |
Target: 5'- aCGCAucuGCaaGUCCCUGgCCCCGGCc- -3' miRNA: 3'- gGCGUu--UGa-CAGGGGCaGGGGUUGca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 97658 | 0.67 | 0.934936 |
Target: 5'- gUCGUAcAGCUcGUCCCUGcugucgucgucUCCCCGGCGc -3' miRNA: 3'- -GGCGU-UUGA-CAGGGGC-----------AGGGGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 99686 | 0.66 | 0.971907 |
Target: 5'- aCCGCGGcuuACgggucgGUCCuCCGUC-CCAugGg -3' miRNA: 3'- -GGCGUU---UGa-----CAGG-GGCAGgGGUugCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 100909 | 0.66 | 0.962979 |
Target: 5'- gUCGCGcuGCUuUCCCCGagCUCCGACGc -3' miRNA: 3'- -GGCGUu-UGAcAGGGGCa-GGGGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 105489 | 0.69 | 0.889756 |
Target: 5'- aCGCAcgGACUGcUCUacaCCGUCCUCAACa- -3' miRNA: 3'- gGCGU--UUGAC-AGG---GGCAGGGGUUGca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 113877 | 0.69 | 0.883136 |
Target: 5'- gCGCGAccgacaacgaagGCUGUCCCUGgCCCUGcGCGUg -3' miRNA: 3'- gGCGUU------------UGACAGGGGCaGGGGU-UGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 118201 | 0.66 | 0.962979 |
Target: 5'- gCCGCGcAUUGUCaCCgccgCGUCCuCCAGCa- -3' miRNA: 3'- -GGCGUuUGACAG-GG----GCAGG-GGUUGca -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 118860 | 0.68 | 0.908341 |
Target: 5'- uCCGCAGAgcGuUCCCCGUCgaaUCAGCGUc -3' miRNA: 3'- -GGCGUUUgaC-AGGGGCAGg--GGUUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 127791 | 0.69 | 0.862053 |
Target: 5'- cCCGCcuGCaccGUCgCCGUacaCCCCAGCGUu -3' miRNA: 3'- -GGCGuuUGa--CAGgGGCA---GGGGUUGCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 135551 | 0.69 | 0.896166 |
Target: 5'- gCCGuCGAGCcggggcGUCgCCCGUCCCCAccacCGUc -3' miRNA: 3'- -GGC-GUUUGa-----CAG-GGGCAGGGGUu---GCA- -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 152169 | 0.72 | 0.762141 |
Target: 5'- aCGU--GCUGUCgCCCGUCuuuCCCGGCGg -3' miRNA: 3'- gGCGuuUGACAG-GGGCAG---GGGUUGCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 156485 | 0.66 | 0.959258 |
Target: 5'- aCCGUAAGCaGUCacagcggcagcggUCCGUCCCUGugGc -3' miRNA: 3'- -GGCGUUUGaCAG-------------GGGCAGGGGUugCa -5' |
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1538 | 3' | -55.9 | NC_001347.2 | + | 157371 | 0.67 | 0.934936 |
Target: 5'- aUCGCGAGCUGggcgaCCGUCUcuaCCAACGc -3' miRNA: 3'- -GGCGUUUGACagg--GGCAGG---GGUUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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