miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 39210 0.67 0.705127
Target:  5'- -aACGCcGCGCGccacACGGCgCCCauGGCCUg -3'
miRNA:   3'- gaUGCGcCGCGCu---UGUCG-GGG--CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 6860 0.67 0.705127
Target:  5'- ----aCGGCGU--GCAGCCgCCGaGCCCg -3'
miRNA:   3'- gaugcGCCGCGcuUGUCGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 136262 0.67 0.699534
Target:  5'- gUGgGCGGaGCGGuaauuuuccaccgccGCGGCCCauGCCCg -3'
miRNA:   3'- gAUgCGCCgCGCU---------------UGUCGGGgcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 112096 0.67 0.699534
Target:  5'- -gACGCGGUaGCGAgGCGGCaacuggcguucaccaCgCCGGCCUg -3'
miRNA:   3'- gaUGCGCCG-CGCU-UGUCG---------------G-GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 59464 0.68 0.629587
Target:  5'- -gAUGCGGUGCGGugucGCCUgGGCaCCa -3'
miRNA:   3'- gaUGCGCCGCGCUugu-CGGGgCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 38652 0.68 0.629587
Target:  5'- cCUGCcCGGCGUcuGCAGCgCcaccgucgugCCGGCCCa -3'
miRNA:   3'- -GAUGcGCCGCGcuUGUCG-G----------GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 199093 0.68 0.620082
Target:  5'- -aGCGCGGCcgcacgcccCGAACGGCUCUGGUUg -3'
miRNA:   3'- gaUGCGCCGc--------GCUUGUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 116199 0.68 0.620082
Target:  5'- -gAgGCGGCGCGAuCGGCCgacauagaguagCCuucgaacgGGCCCa -3'
miRNA:   3'- gaUgCGCCGCGCUuGUCGG------------GG--------CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 98052 0.68 0.620082
Target:  5'- --cCGCGGCG-GcAGCGGCCgCGGCUUc -3'
miRNA:   3'- gauGCGCCGCgC-UUGUCGGgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 94974 0.68 0.620082
Target:  5'- -aGCGUGGagacgaGCGcGCAGCCgCuGCCCa -3'
miRNA:   3'- gaUGCGCCg-----CGCuUGUCGGgGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 47078 0.68 0.620082
Target:  5'- gCUGCgGCGGCGaaGACAGCUgcgauuugUCGGCCg -3'
miRNA:   3'- -GAUG-CGCCGCgcUUGUCGG--------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 37933 0.68 0.647644
Target:  5'- -aGCGCGGCGCGcgggugcaggugcAGCGcGUCCCagcgcGGCCg -3'
miRNA:   3'- gaUGCGCCGCGC-------------UUGU-CGGGG-----CCGGg -5'
1538 5' -62.1 NC_001347.2 + 116789 0.68 0.639092
Target:  5'- -cGCGgGGuCGCGcGCGuaCCaCGGCCCg -3'
miRNA:   3'- gaUGCgCC-GCGCuUGUcgGG-GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 92369 0.68 0.639092
Target:  5'- -gACGCGGCaGC-AACcaGGCgCCGGCgCCg -3'
miRNA:   3'- gaUGCGCCG-CGcUUG--UCGgGGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 79608 0.68 0.648594
Target:  5'- -gACGCGgugaacguGCGCGAA-AGCUUCGGCCg -3'
miRNA:   3'- gaUGCGC--------CGCGCUUgUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 142203 0.68 0.648594
Target:  5'- uCUGaGCGuGCGCGAGgAGauCCCCGcGUCCg -3'
miRNA:   3'- -GAUgCGC-CGCGCUUgUC--GGGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 78343 0.68 0.658084
Target:  5'- -cGCGUGGUcCGGGCGGaCCCGGCg- -3'
miRNA:   3'- gaUGCGCCGcGCUUGUCgGGGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 59086 0.68 0.657135
Target:  5'- uUugGUGGCGCGGccuccuccucucuGCugAGCUgCGGCCa -3'
miRNA:   3'- gAugCGCCGCGCU-------------UG--UCGGgGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 184919 0.68 0.658084
Target:  5'- -aGCGCGcacacGCGCGAcACAGCCgucugcagcucgUCGGCCg -3'
miRNA:   3'- gaUGCGC-----CGCGCU-UGUCGG------------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 87017 0.68 0.619132
Target:  5'- -cGCGcCGGCGUgcuuaaaGAGCAacGCCuCCGuGCCCa -3'
miRNA:   3'- gaUGC-GCCGCG-------CUUGU--CGG-GGC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.