Results 101 - 120 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1538 | 5' | -62.1 | NC_001347.2 | + | 193821 | 0.7 | 0.535584 |
Target: 5'- gCUGCGCacGGCGCGcGAUcuggGGCuCUCGGCCUc -3' miRNA: 3'- -GAUGCG--CCGCGC-UUG----UCG-GGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 156638 | 0.7 | 0.544816 |
Target: 5'- ---gGCGGCGCcgcuGCcgGGCCUCGGCCg -3' miRNA: 3'- gaugCGCCGCGcu--UG--UCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 37262 | 0.7 | 0.535584 |
Target: 5'- uUugGCGGCaGCGgagGugGGCCggGGCCCg -3' miRNA: 3'- gAugCGCCG-CGC---UugUCGGggCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 168803 | 0.71 | 0.445265 |
Target: 5'- -gACGCGcGCGCGGuggccaaACGGCcgcgcgaCCCGGCCg -3' miRNA: 3'- gaUGCGC-CGCGCU-------UGUCG-------GGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 153228 | 0.71 | 0.446956 |
Target: 5'- -aGCGUgaGGCGCGGGCGcGCgUCGGCCg -3' miRNA: 3'- gaUGCG--CCGCGCUUGU-CGgGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 134329 | 0.71 | 0.455465 |
Target: 5'- -cAgGCGGCgaccGCGGACucGCCUCGGCCa -3' miRNA: 3'- gaUgCGCCG----CGCUUGu-CGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 21766 | 0.71 | 0.463198 |
Target: 5'- uCUGCGCuacGGCGCugGGACuuuggcugcugcgGGCCgCGGCCCc -3' miRNA: 3'- -GAUGCG---CCGCG--CUUG-------------UCGGgGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 17329 | 0.71 | 0.464061 |
Target: 5'- -gACGCGguugccGCGCGuAUGGCCgCCGGCCa -3' miRNA: 3'- gaUGCGC------CGCGCuUGUCGG-GGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 63824 | 0.71 | 0.471869 |
Target: 5'- -aGCgGCGGCgGCGAugGCGGggcugguugcuuuUCCCGGCCCu -3' miRNA: 3'- gaUG-CGCCG-CGCU--UGUC-------------GGGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 136035 | 0.71 | 0.481502 |
Target: 5'- -cGCGCccGGUGCc--CGGCCCaCGGCCCc -3' miRNA: 3'- gaUGCG--CCGCGcuuGUCGGG-GCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 200200 | 0.71 | 0.481502 |
Target: 5'- -aGCGUGGUGUGcGACgGGCCCCcgGGCUCg -3' miRNA: 3'- gaUGCGCCGCGC-UUG-UCGGGG--CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 38471 | 0.71 | 0.49836 |
Target: 5'- --cCGCGcagcccagccaccGCGCGGGCAGCaCCGcGCCCa -3' miRNA: 3'- gauGCGC-------------CGCGCUUGUCGgGGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 28166 | 0.71 | 0.499255 |
Target: 5'- --cCGUGGCGCGuGACGGCCCCcuaCCUg -3' miRNA: 3'- gauGCGCCGCGC-UUGUCGGGGcc-GGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 156961 | 0.71 | 0.499255 |
Target: 5'- --uCGUGGUgGCGAGCGcGCUCCGGgCCa -3' miRNA: 3'- gauGCGCCG-CGCUUGU-CGGGGCCgGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 93230 | 0.72 | 0.413833 |
Target: 5'- gCUGaGCGGCaGCGGcgGCA-CCCCGGCUCa -3' miRNA: 3'- -GAUgCGCCG-CGCU--UGUcGGGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 199777 | 0.72 | 0.430208 |
Target: 5'- uCUugGCGGCGCc-GguGCCgCCGGUCUc -3' miRNA: 3'- -GAugCGCCGCGcuUguCGG-GGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 192196 | 0.72 | 0.405791 |
Target: 5'- --cCGCGGCGCGGGCucggcGUCCCGccGUCCg -3' miRNA: 3'- gauGCGCCGCGCUUGu----CGGGGC--CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 95292 | 0.73 | 0.367094 |
Target: 5'- ---aGCGGCGCGGGCcugacuCCUCGGCCUg -3' miRNA: 3'- gaugCGCCGCGCUUGuc----GGGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 5568 | 0.75 | 0.278854 |
Target: 5'- uUGCGCGGUGgGGGCGuGCCCCGcagacCCCg -3' miRNA: 3'- gAUGCGCCGCgCUUGU-CGGGGCc----GGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 136469 | 0.76 | 0.266293 |
Target: 5'- aUGCGCaGgGCGAcccucccGCgGGCCCUGGCCCg -3' miRNA: 3'- gAUGCGcCgCGCU-------UG-UCGGGGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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