Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 100187 | 0.78 | 0.181334 |
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Target: 5'- aUGCGCGGCGCc-GCGGCCUC-GCCCa -3' miRNA: 3'- gAUGCGCCGCGcuUGUCGGGGcCGGG- -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 187126 | 0.79 | 0.173042 |
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Target: 5'- uCUACaGCGGCGCGAuguggUAGCCCUGGUCa -3' miRNA: 3'- -GAUG-CGCCGCGCUu----GUCGGGGCCGGg -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 88039 | 0.8 | 0.136476 |
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Target: 5'- gCUGaGCGGCuGCGGaauGCGGCCCgGGCCCg -3' miRNA: 3'- -GAUgCGCCG-CGCU---UGUCGGGgCCGGG- -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 100875 | 0.8 | 0.143171 |
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Target: 5'- -gAgGCGGCGCGGcGCAGCgCCGGCCa -3' miRNA: 3'- gaUgCGCCGCGCU-UGUCGgGGCCGGg -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 185126 | 0.82 | 0.10455 |
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Target: 5'- --uUGCGGCGCGAGCAGCCgCCGGgCg -3' miRNA: 3'- gauGCGCCGCGCUUGUCGG-GGCCgGg -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 229191 | 1.1 | 0.001263 |
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Target: 5'- cCUACGCGGCGCGAACAGCCCCGGCCCc -3' miRNA: 3'- -GAUGCGCCGCGCUUGUCGGGGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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