miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 87017 0.68 0.619132
Target:  5'- -cGCGcCGGCGUgcuuaaaGAGCAacGCCuCCGuGCCCa -3'
miRNA:   3'- gaUGC-GCCGCG-------CUUGU--CGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 38652 0.68 0.629587
Target:  5'- cCUGCcCGGCGUcuGCAGCgCcaccgucgugCCGGCCCa -3'
miRNA:   3'- -GAUGcGCCGCGcuUGUCG-G----------GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 171290 0.67 0.683598
Target:  5'- gCUAcCGUGcGCGUGAGCAGCgCUacucgcuguuugggCGGCCUg -3'
miRNA:   3'- -GAU-GCGC-CGCGCUUGUCG-GG--------------GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 6860 0.67 0.705127
Target:  5'- ----aCGGCGU--GCAGCCgCCGaGCCCg -3'
miRNA:   3'- gaugcGCCGCGcuUGUCGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 180898 0.67 0.695795
Target:  5'- uCUAcCGCGGUgacGUGGAgAGCCUguCGGCCg -3'
miRNA:   3'- -GAU-GCGCCG---CGCUUgUCGGG--GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 39210 0.67 0.705127
Target:  5'- -aACGCcGCGCGccacACGGCgCCCauGGCCUg -3'
miRNA:   3'- gaUGCGcCGCGCu---UGUCG-GGG--CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 187523 0.67 0.705127
Target:  5'- gUGCGCGaGaCGCuGGucACAGCCaUCGGCCa -3'
miRNA:   3'- gAUGCGC-C-GCG-CU--UGUCGG-GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 125302 0.67 0.714404
Target:  5'- ---aGUGGCGCaaccgucGCAGCCgcgCCGGCCUc -3'
miRNA:   3'- gaugCGCCGCGcu-----UGUCGG---GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 119092 0.67 0.723621
Target:  5'- -gGCGCaGcCGCGcuauGCGGCCC-GGCCUc -3'
miRNA:   3'- gaUGCGcC-GCGCu---UGUCGGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 144450 0.67 0.723621
Target:  5'- -cACGgGGgGCG-ACGGCCCCgagGGCg- -3'
miRNA:   3'- gaUGCgCCgCGCuUGUCGGGG---CCGgg -5'
1538 5' -62.1 NC_001347.2 + 136262 0.67 0.699534
Target:  5'- gUGgGCGGaGCGGuaauuuuccaccgccGCGGCCCauGCCCg -3'
miRNA:   3'- gAUgCGCCgCGCU---------------UGUCGGGgcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 112096 0.67 0.699534
Target:  5'- -gACGCGGUaGCGAgGCGGCaacuggcguucaccaCgCCGGCCUg -3'
miRNA:   3'- gaUGCGCCG-CGCU-UGUCG---------------G-GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 86901 0.67 0.695795
Target:  5'- -aGCGCGGCGCcauGCucGCCCaggagacaGGCgCCg -3'
miRNA:   3'- gaUGCGCCGCGcu-UGu-CGGGg-------CCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 704 0.67 0.695795
Target:  5'- aCUGCGUGGCGCcaaGGCGGCgCCaGCa- -3'
miRNA:   3'- -GAUGCGCCGCGc--UUGUCGgGGcCGgg -5'
1538 5' -62.1 NC_001347.2 + 157237 0.67 0.695795
Target:  5'- ---aGCGGCGguaGAaacgucGCAGCCaCCGGCgCa -3'
miRNA:   3'- gaugCGCCGCg--CU------UGUCGG-GGCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 19358 0.67 0.695795
Target:  5'- -aGCGCGGCcgGCGAGCaaaAGCCaugcacGCCCg -3'
miRNA:   3'- gaUGCGCCG--CGCUUG---UCGGggc---CGGG- -5'
1538 5' -62.1 NC_001347.2 + 161653 0.67 0.686419
Target:  5'- --cCGCGGCGUGGACGcGCCgUUGGCg- -3'
miRNA:   3'- gauGCGCCGCGCUUGU-CGG-GGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 196259 0.67 0.686419
Target:  5'- uCUACGCGGCcuuuuGCGAguGCGGCgaCgGGCgCg -3'
miRNA:   3'- -GAUGCGCCG-----CGCU--UGUCGg-GgCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 159286 0.67 0.686419
Target:  5'- gUGCugGCGGCGcCGGGC-GCCaCGGCCa -3'
miRNA:   3'- gAUG--CGCCGC-GCUUGuCGGgGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 87744 0.67 0.677003
Target:  5'- ---aGCGGCcagaccucGcCGAAgGaGCCCUGGCCCa -3'
miRNA:   3'- gaugCGCCG--------C-GCUUgU-CGGGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.