Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1538 | 5' | -62.1 | NC_001347.2 | + | 19358 | 0.67 | 0.695795 |
Target: 5'- -aGCGCGGCcgGCGAGCaaaAGCCaugcacGCCCg -3' miRNA: 3'- gaUGCGCCG--CGCUUG---UCGGggc---CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 180898 | 0.67 | 0.695795 |
Target: 5'- uCUAcCGCGGUgacGUGGAgAGCCUguCGGCCg -3' miRNA: 3'- -GAU-GCGCCG---CGCUUgUCGGG--GCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 157237 | 0.67 | 0.695795 |
Target: 5'- ---aGCGGCGguaGAaacgucGCAGCCaCCGGCgCa -3' miRNA: 3'- gaugCGCCGCg--CU------UGUCGG-GGCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 704 | 0.67 | 0.695795 |
Target: 5'- aCUGCGUGGCGCcaaGGCGGCgCCaGCa- -3' miRNA: 3'- -GAUGCGCCGCGc--UUGUCGgGGcCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 131863 | 0.66 | 0.759737 |
Target: 5'- -gGCcCGGUGCGAcggAgGGCCCCGacGUCCc -3' miRNA: 3'- gaUGcGCCGCGCU---UgUCGGGGC--CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 73575 | 0.66 | 0.768541 |
Target: 5'- -gGCGCGcaCGCGGACAaagacCCaCCGGCCa -3' miRNA: 3'- gaUGCGCc-GCGCUUGUc----GG-GGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 1209 | 0.66 | 0.77724 |
Target: 5'- -cGCGCGGCGUuuuuggccAACAGCaCgGGCCg -3' miRNA: 3'- gaUGCGCCGCGc-------UUGUCGgGgCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 165202 | 0.66 | 0.77724 |
Target: 5'- -cGCGCGGCGaucuCAGCCuCUGGUa- -3' miRNA: 3'- gaUGCGCCGCgcuuGUCGG-GGCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 197734 | 0.66 | 0.783263 |
Target: 5'- -gACGCGaCGCcGACGGCCaggucauccgcgagUCGGCCUg -3' miRNA: 3'- gaUGCGCcGCGcUUGUCGG--------------GGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 158029 | 0.66 | 0.785827 |
Target: 5'- -cACGCGGgCGcCGGACAGCa--GGCgCg -3' miRNA: 3'- gaUGCGCC-GC-GCUUGUCGgggCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 86012 | 0.66 | 0.785827 |
Target: 5'- --cCGCGGCGCccggcaGACAGCCgCUgacgaaGGCCUc -3' miRNA: 3'- gauGCGCCGCGc-----UUGUCGG-GG------CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 160108 | 0.66 | 0.767665 |
Target: 5'- -gACGUGGCacGCGGAUcaucugaAGCaCCGGCUCu -3' miRNA: 3'- gaUGCGCCG--CGCUUG-------UCGgGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 40092 | 0.66 | 0.759737 |
Target: 5'- -aACGCccgGGgGCGAgggacgACGGCCCUGGggaCCg -3' miRNA: 3'- gaUGCG---CCgCGCU------UGUCGGGGCCg--GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 87653 | 0.66 | 0.759737 |
Target: 5'- ---aGCGGCGCGcguGCGGaUCaGGCCCg -3' miRNA: 3'- gaugCGCCGCGCu--UGUCgGGgCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 136084 | 0.66 | 0.759737 |
Target: 5'- -gACG-GGCccGCGGACggaccggcgccgGGCCUCGGCCg -3' miRNA: 3'- gaUGCgCCG--CGCUUG------------UCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 17018 | 0.66 | 0.77724 |
Target: 5'- uUugGCaGGCGCGcgUGGUCCgCGGCg- -3' miRNA: 3'- gAugCG-CCGCGCuuGUCGGG-GCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 41693 | 0.66 | 0.759737 |
Target: 5'- -aACGUGGCGCGu--GGaUgCCGGCCg -3' miRNA: 3'- gaUGCGCCGCGCuugUC-GgGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 15643 | 0.66 | 0.759737 |
Target: 5'- -gGCGCGGaGCGggUGauuaccGCCCUGGUgCa -3' miRNA: 3'- gaUGCGCCgCGCuuGU------CGGGGCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 39687 | 0.66 | 0.750836 |
Target: 5'- gUGCaCGGCGCGuGCuggcgccGCCuuGGCgCCa -3' miRNA: 3'- gAUGcGCCGCGCuUGu------CGGggCCG-GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 199514 | 0.66 | 0.750836 |
Target: 5'- -cGCccuCGGCaGCGGACGGCucaCCUGGCgCCa -3' miRNA: 3'- gaUGc--GCCG-CGCUUGUCG---GGGCCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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