miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 119092 0.67 0.723621
Target:  5'- -gGCGCaGcCGCGcuauGCGGCCC-GGCCUc -3'
miRNA:   3'- gaUGCGcC-GCGCu---UGUCGGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 128842 0.67 0.723621
Target:  5'- cCUGaGCGaGCGCGAAC-GCCgC-GCCCg -3'
miRNA:   3'- -GAUgCGC-CGCGCUUGuCGGgGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 158548 0.67 0.723621
Target:  5'- gUACGCGaCGUG-ACGGUCCCGcGUCUc -3'
miRNA:   3'- gAUGCGCcGCGCuUGUCGGGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 144450 0.67 0.723621
Target:  5'- -cACGgGGgGCG-ACGGCCCCgagGGCg- -3'
miRNA:   3'- gaUGCgCCgCGCuUGUCGGGG---CCGgg -5'
1538 5' -62.1 NC_001347.2 + 199655 0.66 0.732771
Target:  5'- aCUAgGCGGuCGCGAGacuuuaGGCgacuugCCGGCCUu -3'
miRNA:   3'- -GAUgCGCC-GCGCUUg-----UCGg-----GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 87586 0.66 0.738224
Target:  5'- --cCGUGGcCGUGAGCAGaccgcggugcacgCCCGuGCCCa -3'
miRNA:   3'- gauGCGCC-GCGCUUGUCg------------GGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 40540 0.66 0.741844
Target:  5'- gCUGC-CGGUGCGuuccACGGUCCUuGCCUg -3'
miRNA:   3'- -GAUGcGCCGCGCu---UGUCGGGGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 191672 0.66 0.741844
Target:  5'- -gGCGUGGCGCacGCAGCgaccguaguuguCgCGGUCCg -3'
miRNA:   3'- gaUGCGCCGCGcuUGUCG------------GgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 189022 0.66 0.741844
Target:  5'- aCUG-GCcGCGCGAACGcGCgUgGGCCCu -3'
miRNA:   3'- -GAUgCGcCGCGCUUGU-CGgGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 192755 0.66 0.741844
Target:  5'- -cGCGCGaGuCGCGuguuGACGGaCCCgGaGCCCa -3'
miRNA:   3'- gaUGCGC-C-GCGC----UUGUC-GGGgC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 39687 0.66 0.750836
Target:  5'- gUGCaCGGCGCGuGCuggcgccGCCuuGGCgCCa -3'
miRNA:   3'- gAUGcGCCGCGCuUGu------CGGggCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 199514 0.66 0.750836
Target:  5'- -cGCccuCGGCaGCGGACGGCucaCCUGGCgCCa -3'
miRNA:   3'- gaUGc--GCCG-CGCUUGUCG---GGGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 173537 0.66 0.750836
Target:  5'- -cGCGUGGCgGCGGcggugguggcgGCAGCCUCucuucgcuGGCCa -3'
miRNA:   3'- gaUGCGCCG-CGCU-----------UGUCGGGG--------CCGGg -5'
1538 5' -62.1 NC_001347.2 + 36692 0.66 0.750836
Target:  5'- -cGgGUGGCcUGAGCAcGCCgaGGCCCa -3'
miRNA:   3'- gaUgCGCCGcGCUUGU-CGGggCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 38180 0.66 0.750836
Target:  5'- -cGCGCGGCaCGGuccccgAC-GCCgCCGGaCCCg -3'
miRNA:   3'- gaUGCGCCGcGCU------UGuCGG-GGCC-GGG- -5'
1538 5' -62.1 NC_001347.2 + 2159 0.66 0.750836
Target:  5'- -gGgGCGGaCGCGGcaGCAGCagCGGCgCCg -3'
miRNA:   3'- gaUgCGCC-GCGCU--UGUCGggGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 88623 0.66 0.750836
Target:  5'- cCUGCGCGGCcuGCaccGCGGCUUgagcggCGGCCUg -3'
miRNA:   3'- -GAUGCGCCG--CGcu-UGUCGGG------GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 15643 0.66 0.759737
Target:  5'- -gGCGCGGaGCGggUGauuaccGCCCUGGUgCa -3'
miRNA:   3'- gaUGCGCCgCGCuuGU------CGGGGCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 41693 0.66 0.759737
Target:  5'- -aACGUGGCGCGu--GGaUgCCGGCCg -3'
miRNA:   3'- gaUGCGCCGCGCuugUC-GgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 136084 0.66 0.759737
Target:  5'- -gACG-GGCccGCGGACggaccggcgccgGGCCUCGGCCg -3'
miRNA:   3'- gaUGCgCCG--CGCUUG------------UCGGGGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.