Results 121 - 126 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1538 | 5' | -62.1 | NC_001347.2 | + | 158029 | 0.66 | 0.785827 |
Target: 5'- -cACGCGGgCGcCGGACAGCa--GGCgCg -3' miRNA: 3'- gaUGCGCC-GC-GCUUGUCGgggCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 209410 | 0.66 | 0.785827 |
Target: 5'- aUGCGgggguucuCGGgGCGGACAGgCCaCGGUCa -3' miRNA: 3'- gAUGC--------GCCgCGCUUGUCgGG-GCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 227 | 0.66 | 0.785827 |
Target: 5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3' miRNA: 3'- gaugCGCCGCGCuUGUCGGGGCCggg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 182290 | 0.66 | 0.785827 |
Target: 5'- -cAUGCGGCGUcguugccgGGGCGGCUgcuCCaGGUCCg -3' miRNA: 3'- gaUGCGCCGCG--------CUUGUCGG---GG-CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 166997 | 0.66 | 0.785827 |
Target: 5'- -gACGCGGCGaacccACGGCUUgaaacaGGCCCu -3' miRNA: 3'- gaUGCGCCGCgcu--UGUCGGGg-----CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 12001 | 0.66 | 0.785827 |
Target: 5'- uUugGCaGCGCGGcugucaccgACGGgCCCGaaacGCCCu -3' miRNA: 3'- gAugCGcCGCGCU---------UGUCgGGGC----CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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