Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1538 | 5' | -62.1 | NC_001347.2 | + | 99550 | 0.67 | 0.686419 |
Target: 5'- -cGCGCGGCaGUG-ACAGCuugugaCCCGcGCUCg -3' miRNA: 3'- gaUGCGCCG-CGCuUGUCG------GGGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 171290 | 0.67 | 0.683598 |
Target: 5'- gCUAcCGUGcGCGUGAGCAGCgCUacucgcuguuugggCGGCCUg -3' miRNA: 3'- -GAU-GCGC-CGCGCUUGUCG-GG--------------GCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 87744 | 0.67 | 0.677003 |
Target: 5'- ---aGCGGCcagaccucGcCGAAgGaGCCCUGGCCCa -3' miRNA: 3'- gaugCGCCG--------C-GCUUgU-CGGGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 199404 | 0.67 | 0.67606 |
Target: 5'- gUGCuGCGGCGCGAccACgcugggcucgaAGCCCagauuguCGGCCa -3' miRNA: 3'- gAUG-CGCCGCGCU--UG-----------UCGGG-------GCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 111272 | 0.68 | 0.66661 |
Target: 5'- aUGCGCGGCGCcgucuccGAguuucucccGCAGucCCCCGGauuaCCa -3' miRNA: 3'- gAUGCGCCGCG-------CU---------UGUC--GGGGCCg---GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 184919 | 0.68 | 0.658084 |
Target: 5'- -aGCGCGcacacGCGCGAcACAGCCgucugcagcucgUCGGCCg -3' miRNA: 3'- gaUGCGC-----CGCGCU-UGUCGG------------GGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 78343 | 0.68 | 0.658084 |
Target: 5'- -cGCGUGGUcCGGGCGGaCCCGGCg- -3' miRNA: 3'- gaUGCGCCGcGCUUGUCgGGGCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 59086 | 0.68 | 0.657135 |
Target: 5'- uUugGUGGCGCGGccuccuccucucuGCugAGCUgCGGCCa -3' miRNA: 3'- gAugCGCCGCGCU-------------UG--UCGGgGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 142203 | 0.68 | 0.648594 |
Target: 5'- uCUGaGCGuGCGCGAGgAGauCCCCGcGUCCg -3' miRNA: 3'- -GAUgCGC-CGCGCUUgUC--GGGGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 79608 | 0.68 | 0.648594 |
Target: 5'- -gACGCGgugaacguGCGCGAA-AGCUUCGGCCg -3' miRNA: 3'- gaUGCGC--------CGCGCUUgUCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 37933 | 0.68 | 0.647644 |
Target: 5'- -aGCGCGGCGCGcgggugcaggugcAGCGcGUCCCagcgcGGCCg -3' miRNA: 3'- gaUGCGCCGCGC-------------UUGU-CGGGG-----CCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 116789 | 0.68 | 0.639092 |
Target: 5'- -cGCGgGGuCGCGcGCGuaCCaCGGCCCg -3' miRNA: 3'- gaUGCgCC-GCGCuUGUcgGG-GCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 92369 | 0.68 | 0.639092 |
Target: 5'- -gACGCGGCaGC-AACcaGGCgCCGGCgCCg -3' miRNA: 3'- gaUGCGCCG-CGcUUG--UCGgGGCCG-GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 59464 | 0.68 | 0.629587 |
Target: 5'- -gAUGCGGUGCGGugucGCCUgGGCaCCa -3' miRNA: 3'- gaUGCGCCGCGCUugu-CGGGgCCG-GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 38652 | 0.68 | 0.629587 |
Target: 5'- cCUGCcCGGCGUcuGCAGCgCcaccgucgugCCGGCCCa -3' miRNA: 3'- -GAUGcGCCGCGcuUGUCG-G----------GGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 199093 | 0.68 | 0.620082 |
Target: 5'- -aGCGCGGCcgcacgcccCGAACGGCUCUGGUUg -3' miRNA: 3'- gaUGCGCCGc--------GCUUGUCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 116199 | 0.68 | 0.620082 |
Target: 5'- -gAgGCGGCGCGAuCGGCCgacauagaguagCCuucgaacgGGCCCa -3' miRNA: 3'- gaUgCGCCGCGCUuGUCGG------------GG--------CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 98052 | 0.68 | 0.620082 |
Target: 5'- --cCGCGGCG-GcAGCGGCCgCGGCUUc -3' miRNA: 3'- gauGCGCCGCgC-UUGUCGGgGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 94974 | 0.68 | 0.620082 |
Target: 5'- -aGCGUGGagacgaGCGcGCAGCCgCuGCCCa -3' miRNA: 3'- gaUGCGCCg-----CGCuUGUCGGgGcCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 47078 | 0.68 | 0.620082 |
Target: 5'- gCUGCgGCGGCGaaGACAGCUgcgauuugUCGGCCg -3' miRNA: 3'- -GAUG-CGCCGCgcUUGUCGG--------GGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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