miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 78343 0.68 0.658084
Target:  5'- -cGCGUGGUcCGGGCGGaCCCGGCg- -3'
miRNA:   3'- gaUGCGCCGcGCUUGUCgGGGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 78604 0.69 0.582203
Target:  5'- cCU-CGCGGCGCGaggacuccAugAGCCUgGGCgCg -3'
miRNA:   3'- -GAuGCGCCGCGC--------UugUCGGGgCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 79608 0.68 0.648594
Target:  5'- -gACGCGgugaacguGCGCGAA-AGCUUCGGCCg -3'
miRNA:   3'- gaUGCGC--------CGCGCUUgUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 81560 0.69 0.569982
Target:  5'- -cACGUGGCaGCGGcggcaACAGCCagcgacgaucgccgCCGGCCg -3'
miRNA:   3'- gaUGCGCCG-CGCU-----UGUCGG--------------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 85295 0.7 0.526408
Target:  5'- ---gGCGGCgGCGAAUcGCCCgGGCUg -3'
miRNA:   3'- gaugCGCCG-CGCUUGuCGGGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 86012 0.66 0.785827
Target:  5'- --cCGCGGCGCccggcaGACAGCCgCUgacgaaGGCCUc -3'
miRNA:   3'- gauGCGCCGCGc-----UUGUCGG-GG------CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 86901 0.67 0.695795
Target:  5'- -aGCGCGGCGCcauGCucGCCCaggagacaGGCgCCg -3'
miRNA:   3'- gaUGCGCCGCGcu-UGu-CGGGg-------CCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 87017 0.68 0.619132
Target:  5'- -cGCGcCGGCGUgcuuaaaGAGCAacGCCuCCGuGCCCa -3'
miRNA:   3'- gaUGC-GCCGCG-------CUUGU--CGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 87586 0.66 0.738224
Target:  5'- --cCGUGGcCGUGAGCAGaccgcggugcacgCCCGuGCCCa -3'
miRNA:   3'- gauGCGCC-GCGCUUGUCg------------GGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 87653 0.66 0.759737
Target:  5'- ---aGCGGCGCGcguGCGGaUCaGGCCCg -3'
miRNA:   3'- gaugCGCCGCGCu--UGUCgGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 87744 0.67 0.677003
Target:  5'- ---aGCGGCcagaccucGcCGAAgGaGCCCUGGCCCa -3'
miRNA:   3'- gaugCGCCG--------C-GCUUgU-CGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 88039 0.8 0.136476
Target:  5'- gCUGaGCGGCuGCGGaauGCGGCCCgGGCCCg -3'
miRNA:   3'- -GAUgCGCCG-CGCU---UGUCGGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 88623 0.66 0.750836
Target:  5'- cCUGCGCGGCcuGCaccGCGGCUUgagcggCGGCCUg -3'
miRNA:   3'- -GAUGCGCCG--CGcu-UGUCGGG------GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 92369 0.68 0.639092
Target:  5'- -gACGCGGCaGC-AACcaGGCgCCGGCgCCg -3'
miRNA:   3'- gaUGCGCCG-CGcUUG--UCGgGGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 93230 0.72 0.413833
Target:  5'- gCUGaGCGGCaGCGGcgGCA-CCCCGGCUCa -3'
miRNA:   3'- -GAUgCGCCG-CGCU--UGUcGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 94974 0.68 0.620082
Target:  5'- -aGCGUGGagacgaGCGcGCAGCCgCuGCCCa -3'
miRNA:   3'- gaUGCGCCg-----CGCuUGUCGGgGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 95292 0.73 0.367094
Target:  5'- ---aGCGGCGCGGGCcugacuCCUCGGCCUg -3'
miRNA:   3'- gaugCGCCGCGCUUGuc----GGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 98052 0.68 0.620082
Target:  5'- --cCGCGGCG-GcAGCGGCCgCGGCUUc -3'
miRNA:   3'- gauGCGCCGCgC-UUGUCGGgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 99550 0.67 0.686419
Target:  5'- -cGCGCGGCaGUG-ACAGCuugugaCCCGcGCUCg -3'
miRNA:   3'- gaUGCGCCG-CGCuUGUCG------GGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 100187 0.78 0.181334
Target:  5'- aUGCGCGGCGCc-GCGGCCUC-GCCCa -3'
miRNA:   3'- gAUGCGCCGCGcuUGUCGGGGcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.