miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 100875 0.8 0.143171
Target:  5'- -gAgGCGGCGCGGcGCAGCgCCGGCCa -3'
miRNA:   3'- gaUgCGCCGCGCU-UGUCGgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 110518 0.66 0.768541
Target:  5'- ---aGCGGCGCG-GCGGCgaagaaaaUCGGCCg -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGg-------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 111272 0.68 0.66661
Target:  5'- aUGCGCGGCGCcgucuccGAguuucucccGCAGucCCCCGGauuaCCa -3'
miRNA:   3'- gAUGCGCCGCG-------CU---------UGUC--GGGGCCg---GG- -5'
1538 5' -62.1 NC_001347.2 + 112096 0.67 0.699534
Target:  5'- -gACGCGGUaGCGAgGCGGCaacuggcguucaccaCgCCGGCCUg -3'
miRNA:   3'- gaUGCGCCG-CGCU-UGUCG---------------G-GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 113870 0.69 0.563427
Target:  5'- -aGCGgGaGCGCGAccgacaacgaagGCuGuCCCUGGCCCu -3'
miRNA:   3'- gaUGCgC-CGCGCU------------UGuC-GGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 114183 0.7 0.508239
Target:  5'- -gAUGUcGCGCGGACAGCCgCUGaGCUCg -3'
miRNA:   3'- gaUGCGcCGCGCUUGUCGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 116199 0.68 0.620082
Target:  5'- -gAgGCGGCGCGAuCGGCCgacauagaguagCCuucgaacgGGCCCa -3'
miRNA:   3'- gaUgCGCCGCGCUuGUCGG------------GG--------CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 116789 0.68 0.639092
Target:  5'- -cGCGgGGuCGCGcGCGuaCCaCGGCCCg -3'
miRNA:   3'- gaUGCgCC-GCGCuUGUcgGG-GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 119092 0.67 0.723621
Target:  5'- -gGCGCaGcCGCGcuauGCGGCCC-GGCCUc -3'
miRNA:   3'- gaUGCGcC-GCGCu---UGUCGGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 125302 0.67 0.714404
Target:  5'- ---aGUGGCGCaaccgucGCAGCCgcgCCGGCCUc -3'
miRNA:   3'- gaugCGCCGCGcu-----UGUCGG---GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 128842 0.67 0.723621
Target:  5'- cCUGaGCGaGCGCGAAC-GCCgC-GCCCg -3'
miRNA:   3'- -GAUgCGC-CGCGCUUGuCGGgGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 131863 0.66 0.759737
Target:  5'- -gGCcCGGUGCGAcggAgGGCCCCGacGUCCc -3'
miRNA:   3'- gaUGcGCCGCGCU---UgUCGGGGC--CGGG- -5'
1538 5' -62.1 NC_001347.2 + 134329 0.71 0.455465
Target:  5'- -cAgGCGGCgaccGCGGACucGCCUCGGCCa -3'
miRNA:   3'- gaUgCGCCG----CGCUUGu-CGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 136035 0.71 0.481502
Target:  5'- -cGCGCccGGUGCc--CGGCCCaCGGCCCc -3'
miRNA:   3'- gaUGCG--CCGCGcuuGUCGGG-GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 136084 0.66 0.759737
Target:  5'- -gACG-GGCccGCGGACggaccggcgccgGGCCUCGGCCg -3'
miRNA:   3'- gaUGCgCCG--CGCUUG------------UCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 136262 0.67 0.699534
Target:  5'- gUGgGCGGaGCGGuaauuuuccaccgccGCGGCCCauGCCCg -3'
miRNA:   3'- gAUgCGCCgCGCU---------------UGUCGGGgcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 136469 0.76 0.266293
Target:  5'- aUGCGCaGgGCGAcccucccGCgGGCCCUGGCCCg -3'
miRNA:   3'- gAUGCGcCgCGCU-------UG-UCGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 142203 0.68 0.648594
Target:  5'- uCUGaGCGuGCGCGAGgAGauCCCCGcGUCCg -3'
miRNA:   3'- -GAUgCGC-CGCGCUUgUC--GGGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 142592 0.7 0.535584
Target:  5'- -gGgGCGGCGgGGGCAGCggguuauugCCGGCCa -3'
miRNA:   3'- gaUgCGCCGCgCUUGUCGg--------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 144450 0.67 0.723621
Target:  5'- -cACGgGGgGCG-ACGGCCCCgagGGCg- -3'
miRNA:   3'- gaUGCgCCgCGCuUGUCGGGG---CCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.