Results 81 - 100 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1538 | 5' | -62.1 | NC_001347.2 | + | 150568 | 0.66 | 0.768541 |
Target: 5'- -aGCGuCGGCGUuuuCAGCgUCGGCuCCg -3' miRNA: 3'- gaUGC-GCCGCGcuuGUCGgGGCCG-GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 153228 | 0.71 | 0.446956 |
Target: 5'- -aGCGUgaGGCGCGGGCGcGCgUCGGCCg -3' miRNA: 3'- gaUGCG--CCGCGCUUGU-CGgGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 154290 | 0.7 | 0.508239 |
Target: 5'- -gGCGUGGUGCucauGAcgcCGGUgCCGGCCCa -3' miRNA: 3'- gaUGCGCCGCG----CUu--GUCGgGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 156638 | 0.7 | 0.544816 |
Target: 5'- ---gGCGGCGCcgcuGCcgGGCCUCGGCCg -3' miRNA: 3'- gaugCGCCGCGcu--UG--UCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 156961 | 0.71 | 0.499255 |
Target: 5'- --uCGUGGUgGCGAGCGcGCUCCGGgCCa -3' miRNA: 3'- gauGCGCCG-CGCUUGU-CGGGGCCgGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 157237 | 0.67 | 0.695795 |
Target: 5'- ---aGCGGCGguaGAaacgucGCAGCCaCCGGCgCa -3' miRNA: 3'- gaugCGCCGCg--CU------UGUCGG-GGCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 158029 | 0.66 | 0.785827 |
Target: 5'- -cACGCGGgCGcCGGACAGCa--GGCgCg -3' miRNA: 3'- gaUGCGCC-GC-GCUUGUCGgggCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 158097 | 0.66 | 0.785827 |
Target: 5'- -cGCGCuGCGCG-GCGGCCUcauCGGCa- -3' miRNA: 3'- gaUGCGcCGCGCuUGUCGGG---GCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 158548 | 0.67 | 0.723621 |
Target: 5'- gUACGCGaCGUG-ACGGUCCCGcGUCUc -3' miRNA: 3'- gAUGCGCcGCGCuUGUCGGGGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 159286 | 0.67 | 0.686419 |
Target: 5'- gUGCugGCGGCGcCGGGC-GCCaCGGCCa -3' miRNA: 3'- gAUG--CGCCGC-GCUUGuCGGgGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 160108 | 0.66 | 0.767665 |
Target: 5'- -gACGUGGCacGCGGAUcaucugaAGCaCCGGCUCu -3' miRNA: 3'- gaUGCGCCG--CGCUUG-------UCGgGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 161579 | 0.66 | 0.785827 |
Target: 5'- -cGCGCGGCGCcgcCGGCUaCGcGUCCg -3' miRNA: 3'- gaUGCGCCGCGcuuGUCGGgGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 161653 | 0.67 | 0.686419 |
Target: 5'- --cCGCGGCGUGGACGcGCCgUUGGCg- -3' miRNA: 3'- gauGCGCCGCGCUUGU-CGG-GGCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 165202 | 0.66 | 0.77724 |
Target: 5'- -cGCGCGGCGaucuCAGCCuCUGGUa- -3' miRNA: 3'- gaUGCGCCGCgcuuGUCGG-GGCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 166116 | 0.69 | 0.610586 |
Target: 5'- -cGCGUaaGGCGCGAuCcGCUUCGGCCg -3' miRNA: 3'- gaUGCG--CCGCGCUuGuCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 166997 | 0.66 | 0.785827 |
Target: 5'- -gACGCGGCGaacccACGGCUUgaaacaGGCCCu -3' miRNA: 3'- gaUGCGCCGCgcu--UGUCGGGg-----CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 168803 | 0.71 | 0.445265 |
Target: 5'- -gACGCGcGCGCGGuggccaaACGGCcgcgcgaCCCGGCCg -3' miRNA: 3'- gaUGCGC-CGCGCU-------UGUCG-------GGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 169090 | 0.7 | 0.542041 |
Target: 5'- -cACGCGcugccugcucgaaaGCGUGuacACGGCCUCGGCCg -3' miRNA: 3'- gaUGCGC--------------CGCGCu--UGUCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 171290 | 0.67 | 0.683598 |
Target: 5'- gCUAcCGUGcGCGUGAGCAGCgCUacucgcuguuugggCGGCCUg -3' miRNA: 3'- -GAU-GCGC-CGCGCUUGUCG-GG--------------GCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 173537 | 0.66 | 0.750836 |
Target: 5'- -cGCGUGGCgGCGGcggugguggcgGCAGCCUCucuucgcuGGCCa -3' miRNA: 3'- gaUGCGCCG-CGCU-----------UGUCGGGG--------CCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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