miRNA display CGI


Results 101 - 120 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 174094 0.66 0.768541
Target:  5'- -aACGUGucCGCGGACA-CCCgCGGCCg -3'
miRNA:   3'- gaUGCGCc-GCGCUUGUcGGG-GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 180898 0.67 0.695795
Target:  5'- uCUAcCGCGGUgacGUGGAgAGCCUguCGGCCg -3'
miRNA:   3'- -GAU-GCGCCG---CGCUUgUCGGG--GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 182290 0.66 0.785827
Target:  5'- -cAUGCGGCGUcguugccgGGGCGGCUgcuCCaGGUCCg -3'
miRNA:   3'- gaUGCGCCGCG--------CUUGUCGG---GG-CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 183460 0.69 0.572797
Target:  5'- -----aGGCGCGGAUAgcgcGCCUCGGCCUc -3'
miRNA:   3'- gaugcgCCGCGCUUGU----CGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 183612 0.66 0.785827
Target:  5'- uUGCGCaGCGCGGcAgAGCCgaUGaGCCCu -3'
miRNA:   3'- gAUGCGcCGCGCU-UgUCGGg-GC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 184919 0.68 0.658084
Target:  5'- -aGCGCGcacacGCGCGAcACAGCCgucugcagcucgUCGGCCg -3'
miRNA:   3'- gaUGCGC-----CGCGCU-UGUCGG------------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 185126 0.82 0.10455
Target:  5'- --uUGCGGCGCGAGCAGCCgCCGGgCg -3'
miRNA:   3'- gauGCGCCGCGCUUGUCGG-GGCCgGg -5'
1538 5' -62.1 NC_001347.2 + 187126 0.79 0.173042
Target:  5'- uCUACaGCGGCGCGAuguggUAGCCCUGGUCa -3'
miRNA:   3'- -GAUG-CGCCGCGCUu----GUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 187523 0.67 0.705127
Target:  5'- gUGCGCGaGaCGCuGGucACAGCCaUCGGCCa -3'
miRNA:   3'- gAUGCGC-C-GCG-CU--UGUCGG-GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 189022 0.66 0.741844
Target:  5'- aCUG-GCcGCGCGAACGcGCgUgGGCCCu -3'
miRNA:   3'- -GAUgCGcCGCGCUUGU-CGgGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 191672 0.66 0.741844
Target:  5'- -gGCGUGGCGCacGCAGCgaccguaguuguCgCGGUCCg -3'
miRNA:   3'- gaUGCGCCGCGcuUGUCG------------GgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 192196 0.72 0.405791
Target:  5'- --cCGCGGCGCGGGCucggcGUCCCGccGUCCg -3'
miRNA:   3'- gauGCGCCGCGCUUGu----CGGGGC--CGGG- -5'
1538 5' -62.1 NC_001347.2 + 192755 0.66 0.741844
Target:  5'- -cGCGCGaGuCGCGuguuGACGGaCCCgGaGCCCa -3'
miRNA:   3'- gaUGCGC-C-GCGC----UUGUC-GGGgC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 193821 0.7 0.535584
Target:  5'- gCUGCGCacGGCGCGcGAUcuggGGCuCUCGGCCUc -3'
miRNA:   3'- -GAUGCG--CCGCGC-UUG----UCG-GGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 196259 0.67 0.686419
Target:  5'- uCUACGCGGCcuuuuGCGAguGCGGCgaCgGGCgCg -3'
miRNA:   3'- -GAUGCGCCG-----CGCU--UGUCGg-GgCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 197734 0.66 0.783263
Target:  5'- -gACGCGaCGCcGACGGCCaggucauccgcgagUCGGCCUg -3'
miRNA:   3'- gaUGCGCcGCGcUUGUCGG--------------GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 198079 0.66 0.77724
Target:  5'- gCUGuCGCGGCggucGCGAcggugACGGUCCC-GCUCg -3'
miRNA:   3'- -GAU-GCGCCG----CGCU-----UGUCGGGGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 199093 0.68 0.620082
Target:  5'- -aGCGCGGCcgcacgcccCGAACGGCUCUGGUUg -3'
miRNA:   3'- gaUGCGCCGc--------GCUUGUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 199404 0.67 0.67606
Target:  5'- gUGCuGCGGCGCGAccACgcugggcucgaAGCCCagauuguCGGCCa -3'
miRNA:   3'- gAUG-CGCCGCGCU--UG-----------UCGGG-------GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 199514 0.66 0.750836
Target:  5'- -cGCccuCGGCaGCGGACGGCucaCCUGGCgCCa -3'
miRNA:   3'- gaUGc--GCCG-CGCUUGUCG---GGGCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.