Results 121 - 126 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 199655 | 0.66 | 0.732771 |
|
Target: 5'- aCUAgGCGGuCGCGAGacuuuaGGCgacuugCCGGCCUu -3' miRNA: 3'- -GAUgCGCC-GCGCUUg-----UCGg-----GGCCGGG- -5' |
|||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 199777 | 0.72 | 0.430208 |
|
Target: 5'- uCUugGCGGCGCc-GguGCCgCCGGUCUc -3' miRNA: 3'- -GAugCGCCGCGcuUguCGG-GGCCGGG- -5' |
|||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 200200 | 0.71 | 0.481502 |
|
Target: 5'- -aGCGUGGUGUGcGACgGGCCCCcgGGCUCg -3' miRNA: 3'- gaUGCGCCGCGC-UUG-UCGGGG--CCGGG- -5' |
|||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 209410 | 0.66 | 0.785827 |
|
Target: 5'- aUGCGgggguucuCGGgGCGGACAGgCCaCGGUCa -3' miRNA: 3'- gAUGC--------GCCgCGCUUGUCgGG-GCCGGg -5' |
|||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 229191 | 1.1 | 0.001263 |
|
Target: 5'- cCUACGCGGCGCGAACAGCCCCGGCCCc -3' miRNA: 3'- -GAUGCGCCGCGCUUGUCGGGGCCGGG- -5' |
|||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 229706 | 0.66 | 0.785827 |
|
Target: 5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3' miRNA: 3'- gaugCGCCGCGCuUGUCGGGGCCggg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home