miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 184919 0.68 0.658084
Target:  5'- -aGCGCGcacacGCGCGAcACAGCCgucugcagcucgUCGGCCg -3'
miRNA:   3'- gaUGCGC-----CGCGCU-UGUCGG------------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 183612 0.66 0.785827
Target:  5'- uUGCGCaGCGCGGcAgAGCCgaUGaGCCCu -3'
miRNA:   3'- gAUGCGcCGCGCU-UgUCGGg-GC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 183460 0.69 0.572797
Target:  5'- -----aGGCGCGGAUAgcgcGCCUCGGCCUc -3'
miRNA:   3'- gaugcgCCGCGCUUGU----CGGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 182290 0.66 0.785827
Target:  5'- -cAUGCGGCGUcguugccgGGGCGGCUgcuCCaGGUCCg -3'
miRNA:   3'- gaUGCGCCGCG--------CUUGUCGG---GG-CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 180898 0.67 0.695795
Target:  5'- uCUAcCGCGGUgacGUGGAgAGCCUguCGGCCg -3'
miRNA:   3'- -GAU-GCGCCG---CGCUUgUCGGG--GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 174094 0.66 0.768541
Target:  5'- -aACGUGucCGCGGACA-CCCgCGGCCg -3'
miRNA:   3'- gaUGCGCc-GCGCUUGUcGGG-GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 173537 0.66 0.750836
Target:  5'- -cGCGUGGCgGCGGcggugguggcgGCAGCCUCucuucgcuGGCCa -3'
miRNA:   3'- gaUGCGCCG-CGCU-----------UGUCGGGG--------CCGGg -5'
1538 5' -62.1 NC_001347.2 + 171290 0.67 0.683598
Target:  5'- gCUAcCGUGcGCGUGAGCAGCgCUacucgcuguuugggCGGCCUg -3'
miRNA:   3'- -GAU-GCGC-CGCGCUUGUCG-GG--------------GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 169090 0.7 0.542041
Target:  5'- -cACGCGcugccugcucgaaaGCGUGuacACGGCCUCGGCCg -3'
miRNA:   3'- gaUGCGC--------------CGCGCu--UGUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 168803 0.71 0.445265
Target:  5'- -gACGCGcGCGCGGuggccaaACGGCcgcgcgaCCCGGCCg -3'
miRNA:   3'- gaUGCGC-CGCGCU-------UGUCG-------GGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 166997 0.66 0.785827
Target:  5'- -gACGCGGCGaacccACGGCUUgaaacaGGCCCu -3'
miRNA:   3'- gaUGCGCCGCgcu--UGUCGGGg-----CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 166116 0.69 0.610586
Target:  5'- -cGCGUaaGGCGCGAuCcGCUUCGGCCg -3'
miRNA:   3'- gaUGCG--CCGCGCUuGuCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 165202 0.66 0.77724
Target:  5'- -cGCGCGGCGaucuCAGCCuCUGGUa- -3'
miRNA:   3'- gaUGCGCCGCgcuuGUCGG-GGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 161653 0.67 0.686419
Target:  5'- --cCGCGGCGUGGACGcGCCgUUGGCg- -3'
miRNA:   3'- gauGCGCCGCGCUUGU-CGG-GGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 161579 0.66 0.785827
Target:  5'- -cGCGCGGCGCcgcCGGCUaCGcGUCCg -3'
miRNA:   3'- gaUGCGCCGCGcuuGUCGGgGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 160108 0.66 0.767665
Target:  5'- -gACGUGGCacGCGGAUcaucugaAGCaCCGGCUCu -3'
miRNA:   3'- gaUGCGCCG--CGCUUG-------UCGgGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 159286 0.67 0.686419
Target:  5'- gUGCugGCGGCGcCGGGC-GCCaCGGCCa -3'
miRNA:   3'- gAUG--CGCCGC-GCUUGuCGGgGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 158548 0.67 0.723621
Target:  5'- gUACGCGaCGUG-ACGGUCCCGcGUCUc -3'
miRNA:   3'- gAUGCGCcGCGCuUGUCGGGGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 158097 0.66 0.785827
Target:  5'- -cGCGCuGCGCG-GCGGCCUcauCGGCa- -3'
miRNA:   3'- gaUGCGcCGCGCuUGUCGGG---GCCGgg -5'
1538 5' -62.1 NC_001347.2 + 158029 0.66 0.785827
Target:  5'- -cACGCGGgCGcCGGACAGCa--GGCgCg -3'
miRNA:   3'- gaUGCGCC-GC-GCUUGUCGgggCCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.