miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 86012 0.66 0.785827
Target:  5'- --cCGCGGCGCccggcaGACAGCCgCUgacgaaGGCCUc -3'
miRNA:   3'- gauGCGCCGCGc-----UUGUCGG-GG------CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 85295 0.7 0.526408
Target:  5'- ---gGCGGCgGCGAAUcGCCCgGGCUg -3'
miRNA:   3'- gaugCGCCG-CGCUUGuCGGGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 81560 0.69 0.569982
Target:  5'- -cACGUGGCaGCGGcggcaACAGCCagcgacgaucgccgCCGGCCg -3'
miRNA:   3'- gaUGCGCCG-CGCU-----UGUCGG--------------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 79608 0.68 0.648594
Target:  5'- -gACGCGgugaacguGCGCGAA-AGCUUCGGCCg -3'
miRNA:   3'- gaUGCGC--------CGCGCUUgUCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 78604 0.69 0.582203
Target:  5'- cCU-CGCGGCGCGaggacuccAugAGCCUgGGCgCg -3'
miRNA:   3'- -GAuGCGCCGCGC--------UugUCGGGgCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 78343 0.68 0.658084
Target:  5'- -cGCGUGGUcCGGGCGGaCCCGGCg- -3'
miRNA:   3'- gaUGCGCCGcGCUUGUCgGGGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 73575 0.66 0.768541
Target:  5'- -gGCGCGcaCGCGGACAaagacCCaCCGGCCa -3'
miRNA:   3'- gaUGCGCc-GCGCUUGUc----GG-GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 67018 0.66 0.77724
Target:  5'- -aACGcCGGCuGCGGagACAGCUgCGGCg- -3'
miRNA:   3'- gaUGC-GCCG-CGCU--UGUCGGgGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 65173 0.69 0.563427
Target:  5'- aUGCGCGGCuacaGCGAguGCGGCgaUGGCUCg -3'
miRNA:   3'- gAUGCGCCG----CGCU--UGUCGggGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 63824 0.71 0.471869
Target:  5'- -aGCgGCGGCgGCGAugGCGGggcugguugcuuuUCCCGGCCCu -3'
miRNA:   3'- gaUG-CGCCG-CGCU--UGUC-------------GGGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 59464 0.68 0.629587
Target:  5'- -gAUGCGGUGCGGugucGCCUgGGCaCCa -3'
miRNA:   3'- gaUGCGCCGCGCUugu-CGGGgCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 59086 0.68 0.657135
Target:  5'- uUugGUGGCGCGGccuccuccucucuGCugAGCUgCGGCCa -3'
miRNA:   3'- gAugCGCCGCGCU-------------UG--UCGGgGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 47746 0.69 0.602051
Target:  5'- -gACGCGGCGCaccaaugccgaauccAAUAGCCgCCGuGCCUc -3'
miRNA:   3'- gaUGCGCCGCGc--------------UUGUCGG-GGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 47078 0.68 0.620082
Target:  5'- gCUGCgGCGGCGaaGACAGCUgcgauuugUCGGCCg -3'
miRNA:   3'- -GAUG-CGCCGCgcUUGUCGG--------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 41693 0.66 0.759737
Target:  5'- -aACGUGGCGCGu--GGaUgCCGGCCg -3'
miRNA:   3'- gaUGCGCCGCGCuugUC-GgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 40540 0.66 0.741844
Target:  5'- gCUGC-CGGUGCGuuccACGGUCCUuGCCUg -3'
miRNA:   3'- -GAUGcGCCGCGCu---UGUCGGGGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 40092 0.66 0.759737
Target:  5'- -aACGCccgGGgGCGAgggacgACGGCCCUGGggaCCg -3'
miRNA:   3'- gaUGCG---CCgCGCU------UGUCGGGGCCg--GG- -5'
1538 5' -62.1 NC_001347.2 + 39687 0.66 0.750836
Target:  5'- gUGCaCGGCGCGuGCuggcgccGCCuuGGCgCCa -3'
miRNA:   3'- gAUGcGCCGCGCuUGu------CGGggCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 39210 0.67 0.705127
Target:  5'- -aACGCcGCGCGccacACGGCgCCCauGGCCUg -3'
miRNA:   3'- gaUGCGcCGCGCu---UGUCG-GGG--CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 38770 0.69 0.610586
Target:  5'- -aGCGuCGcGCGCGGGguGCCCaC-GCCCa -3'
miRNA:   3'- gaUGC-GC-CGCGCUUguCGGG-GcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.