Results 121 - 126 of 126 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1538 | 5' | -62.1 | NC_001347.2 | + | 6860 | 0.67 | 0.705127 |
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Target: 5'- ----aCGGCGU--GCAGCCgCCGaGCCCg -3' miRNA: 3'- gaugcGCCGCGcuUGUCGG-GGC-CGGG- -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 5568 | 0.75 | 0.278854 |
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Target: 5'- uUGCGCGGUGgGGGCGuGCCCCGcagacCCCg -3' miRNA: 3'- gAUGCGCCGCgCUUGU-CGGGGCc----GGG- -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 2159 | 0.66 | 0.750836 |
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Target: 5'- -gGgGCGGaCGCGGcaGCAGCagCGGCgCCg -3' miRNA: 3'- gaUgCGCC-GCGCU--UGUCGggGCCG-GG- -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 1209 | 0.66 | 0.77724 |
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Target: 5'- -cGCGCGGCGUuuuuggccAACAGCaCgGGCCg -3' miRNA: 3'- gaUGCGCCGCGc-------UUGUCGgGgCCGGg -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 704 | 0.67 | 0.695795 |
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Target: 5'- aCUGCGUGGCGCcaaGGCGGCgCCaGCa- -3' miRNA: 3'- -GAUGCGCCGCGc--UUGUCGgGGcCGgg -5' |
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| 1538 | 5' | -62.1 | NC_001347.2 | + | 227 | 0.66 | 0.785827 |
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Target: 5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3' miRNA: 3'- gaugCGCCGCGCuUGUCGGGGCCggg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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