miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 86012 0.66 0.785827
Target:  5'- --cCGCGGCGCccggcaGACAGCCgCUgacgaaGGCCUc -3'
miRNA:   3'- gauGCGCCGCGc-----UUGUCGG-GG------CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 161579 0.66 0.785827
Target:  5'- -cGCGCGGCGCcgcCGGCUaCGcGUCCg -3'
miRNA:   3'- gaUGCGCCGCGcuuGUCGGgGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 158097 0.66 0.785827
Target:  5'- -cGCGCuGCGCG-GCGGCCUcauCGGCa- -3'
miRNA:   3'- gaUGCGcCGCGCuUGUCGGG---GCCGgg -5'
1538 5' -62.1 NC_001347.2 + 229706 0.66 0.785827
Target:  5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGGGGCCggg -5'
1538 5' -62.1 NC_001347.2 + 183612 0.66 0.785827
Target:  5'- uUGCGCaGCGCGGcAgAGCCgaUGaGCCCu -3'
miRNA:   3'- gAUGCGcCGCGCU-UgUCGGg-GC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 1209 0.66 0.77724
Target:  5'- -cGCGCGGCGUuuuuggccAACAGCaCgGGCCg -3'
miRNA:   3'- gaUGCGCCGCGc-------UUGUCGgGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 7119 0.66 0.77724
Target:  5'- -gGCGUucuuucccaacGGCGUGGACGGUCuCCGGUg- -3'
miRNA:   3'- gaUGCG-----------CCGCGCUUGUCGG-GGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 15643 0.66 0.759737
Target:  5'- -gGCGCGGaGCGggUGauuaccGCCCUGGUgCa -3'
miRNA:   3'- gaUGCGCCgCGCuuGU------CGGGGCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 41693 0.66 0.759737
Target:  5'- -aACGUGGCGCGu--GGaUgCCGGCCg -3'
miRNA:   3'- gaUGCGCCGCGCuugUC-GgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 136084 0.66 0.759737
Target:  5'- -gACG-GGCccGCGGACggaccggcgccgGGCCUCGGCCg -3'
miRNA:   3'- gaUGCgCCG--CGCUUG------------UCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 87653 0.66 0.759737
Target:  5'- ---aGCGGCGCGcguGCGGaUCaGGCCCg -3'
miRNA:   3'- gaugCGCCGCGCu--UGUCgGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 40092 0.66 0.759737
Target:  5'- -aACGCccgGGgGCGAgggacgACGGCCCUGGggaCCg -3'
miRNA:   3'- gaUGCG---CCgCGCU------UGUCGGGGCCg--GG- -5'
1538 5' -62.1 NC_001347.2 + 160108 0.66 0.767665
Target:  5'- -gACGUGGCacGCGGAUcaucugaAGCaCCGGCUCu -3'
miRNA:   3'- gaUGCGCCG--CGCUUG-------UCGgGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 131863 0.66 0.759737
Target:  5'- -gGCcCGGUGCGAcggAgGGCCCCGacGUCCc -3'
miRNA:   3'- gaUGcGCCGCGCU---UgUCGGGGC--CGGG- -5'
1538 5' -62.1 NC_001347.2 + 73575 0.66 0.768541
Target:  5'- -gGCGCGcaCGCGGACAaagacCCaCCGGCCa -3'
miRNA:   3'- gaUGCGCc-GCGCUUGUc----GG-GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 174094 0.66 0.768541
Target:  5'- -aACGUGucCGCGGACA-CCCgCGGCCg -3'
miRNA:   3'- gaUGCGCc-GCGCUUGUcGGG-GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 110518 0.66 0.768541
Target:  5'- ---aGCGGCGCG-GCGGCgaagaaaaUCGGCCg -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGg-------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 198079 0.66 0.77724
Target:  5'- gCUGuCGCGGCggucGCGAcggugACGGUCCC-GCUCg -3'
miRNA:   3'- -GAU-GCGCCG----CGCU-----UGUCGGGGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 150568 0.66 0.768541
Target:  5'- -aGCGuCGGCGUuuuCAGCgUCGGCuCCg -3'
miRNA:   3'- gaUGC-GCCGCGcuuGUCGgGGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 67018 0.66 0.77724
Target:  5'- -aACGcCGGCuGCGGagACAGCUgCGGCg- -3'
miRNA:   3'- gaUGC-GCCG-CGCU--UGUCGGgGCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.