Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1538 | 5' | -62.1 | NC_001347.2 | + | 86012 | 0.66 | 0.785827 |
Target: 5'- --cCGCGGCGCccggcaGACAGCCgCUgacgaaGGCCUc -3' miRNA: 3'- gauGCGCCGCGc-----UUGUCGG-GG------CCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 161579 | 0.66 | 0.785827 |
Target: 5'- -cGCGCGGCGCcgcCGGCUaCGcGUCCg -3' miRNA: 3'- gaUGCGCCGCGcuuGUCGGgGC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 158097 | 0.66 | 0.785827 |
Target: 5'- -cGCGCuGCGCG-GCGGCCUcauCGGCa- -3' miRNA: 3'- gaUGCGcCGCGCuUGUCGGG---GCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 229706 | 0.66 | 0.785827 |
Target: 5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3' miRNA: 3'- gaugCGCCGCGCuUGUCGGGGCCggg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 183612 | 0.66 | 0.785827 |
Target: 5'- uUGCGCaGCGCGGcAgAGCCgaUGaGCCCu -3' miRNA: 3'- gAUGCGcCGCGCU-UgUCGGg-GC-CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 1209 | 0.66 | 0.77724 |
Target: 5'- -cGCGCGGCGUuuuuggccAACAGCaCgGGCCg -3' miRNA: 3'- gaUGCGCCGCGc-------UUGUCGgGgCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 7119 | 0.66 | 0.77724 |
Target: 5'- -gGCGUucuuucccaacGGCGUGGACGGUCuCCGGUg- -3' miRNA: 3'- gaUGCG-----------CCGCGCUUGUCGG-GGCCGgg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 15643 | 0.66 | 0.759737 |
Target: 5'- -gGCGCGGaGCGggUGauuaccGCCCUGGUgCa -3' miRNA: 3'- gaUGCGCCgCGCuuGU------CGGGGCCGgG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 41693 | 0.66 | 0.759737 |
Target: 5'- -aACGUGGCGCGu--GGaUgCCGGCCg -3' miRNA: 3'- gaUGCGCCGCGCuugUC-GgGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 136084 | 0.66 | 0.759737 |
Target: 5'- -gACG-GGCccGCGGACggaccggcgccgGGCCUCGGCCg -3' miRNA: 3'- gaUGCgCCG--CGCUUG------------UCGGGGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 87653 | 0.66 | 0.759737 |
Target: 5'- ---aGCGGCGCGcguGCGGaUCaGGCCCg -3' miRNA: 3'- gaugCGCCGCGCu--UGUCgGGgCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 40092 | 0.66 | 0.759737 |
Target: 5'- -aACGCccgGGgGCGAgggacgACGGCCCUGGggaCCg -3' miRNA: 3'- gaUGCG---CCgCGCU------UGUCGGGGCCg--GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 160108 | 0.66 | 0.767665 |
Target: 5'- -gACGUGGCacGCGGAUcaucugaAGCaCCGGCUCu -3' miRNA: 3'- gaUGCGCCG--CGCUUG-------UCGgGGCCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 131863 | 0.66 | 0.759737 |
Target: 5'- -gGCcCGGUGCGAcggAgGGCCCCGacGUCCc -3' miRNA: 3'- gaUGcGCCGCGCU---UgUCGGGGC--CGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 73575 | 0.66 | 0.768541 |
Target: 5'- -gGCGCGcaCGCGGACAaagacCCaCCGGCCa -3' miRNA: 3'- gaUGCGCc-GCGCUUGUc----GG-GGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 174094 | 0.66 | 0.768541 |
Target: 5'- -aACGUGucCGCGGACA-CCCgCGGCCg -3' miRNA: 3'- gaUGCGCc-GCGCUUGUcGGG-GCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 110518 | 0.66 | 0.768541 |
Target: 5'- ---aGCGGCGCG-GCGGCgaagaaaaUCGGCCg -3' miRNA: 3'- gaugCGCCGCGCuUGUCGg-------GGCCGGg -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 198079 | 0.66 | 0.77724 |
Target: 5'- gCUGuCGCGGCggucGCGAcggugACGGUCCC-GCUCg -3' miRNA: 3'- -GAU-GCGCCG----CGCU-----UGUCGGGGcCGGG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 150568 | 0.66 | 0.768541 |
Target: 5'- -aGCGuCGGCGUuuuCAGCgUCGGCuCCg -3' miRNA: 3'- gaUGC-GCCGCGcuuGUCGgGGCCG-GG- -5' |
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1538 | 5' | -62.1 | NC_001347.2 | + | 67018 | 0.66 | 0.77724 |
Target: 5'- -aACGcCGGCuGCGGagACAGCUgCGGCg- -3' miRNA: 3'- gaUGC-GCCG-CGCU--UGUCGGgGCCGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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