miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 110518 0.66 0.768541
Target:  5'- ---aGCGGCGCG-GCGGCgaagaaaaUCGGCCg -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGg-------GGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 150568 0.66 0.768541
Target:  5'- -aGCGuCGGCGUuuuCAGCgUCGGCuCCg -3'
miRNA:   3'- gaUGC-GCCGCGcuuGUCGgGGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 160108 0.66 0.767665
Target:  5'- -gACGUGGCacGCGGAUcaucugaAGCaCCGGCUCu -3'
miRNA:   3'- gaUGCGCCG--CGCUUG-------UCGgGGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 15643 0.66 0.759737
Target:  5'- -gGCGCGGaGCGggUGauuaccGCCCUGGUgCa -3'
miRNA:   3'- gaUGCGCCgCGCuuGU------CGGGGCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 41693 0.66 0.759737
Target:  5'- -aACGUGGCGCGu--GGaUgCCGGCCg -3'
miRNA:   3'- gaUGCGCCGCGCuugUC-GgGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 136084 0.66 0.759737
Target:  5'- -gACG-GGCccGCGGACggaccggcgccgGGCCUCGGCCg -3'
miRNA:   3'- gaUGCgCCG--CGCUUG------------UCGGGGCCGGg -5'
1538 5' -62.1 NC_001347.2 + 87653 0.66 0.759737
Target:  5'- ---aGCGGCGCGcguGCGGaUCaGGCCCg -3'
miRNA:   3'- gaugCGCCGCGCu--UGUCgGGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 40092 0.66 0.759737
Target:  5'- -aACGCccgGGgGCGAgggacgACGGCCCUGGggaCCg -3'
miRNA:   3'- gaUGCG---CCgCGCU------UGUCGGGGCCg--GG- -5'
1538 5' -62.1 NC_001347.2 + 131863 0.66 0.759737
Target:  5'- -gGCcCGGUGCGAcggAgGGCCCCGacGUCCc -3'
miRNA:   3'- gaUGcGCCGCGCU---UgUCGGGGC--CGGG- -5'
1538 5' -62.1 NC_001347.2 + 2159 0.66 0.750836
Target:  5'- -gGgGCGGaCGCGGcaGCAGCagCGGCgCCg -3'
miRNA:   3'- gaUgCGCC-GCGCU--UGUCGggGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 38180 0.66 0.750836
Target:  5'- -cGCGCGGCaCGGuccccgAC-GCCgCCGGaCCCg -3'
miRNA:   3'- gaUGCGCCGcGCU------UGuCGG-GGCC-GGG- -5'
1538 5' -62.1 NC_001347.2 + 36692 0.66 0.750836
Target:  5'- -cGgGUGGCcUGAGCAcGCCgaGGCCCa -3'
miRNA:   3'- gaUgCGCCGcGCUUGU-CGGggCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 88623 0.66 0.750836
Target:  5'- cCUGCGCGGCcuGCaccGCGGCUUgagcggCGGCCUg -3'
miRNA:   3'- -GAUGCGCCG--CGcu-UGUCGGG------GCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 173537 0.66 0.750836
Target:  5'- -cGCGUGGCgGCGGcggugguggcgGCAGCCUCucuucgcuGGCCa -3'
miRNA:   3'- gaUGCGCCG-CGCU-----------UGUCGGGG--------CCGGg -5'
1538 5' -62.1 NC_001347.2 + 199514 0.66 0.750836
Target:  5'- -cGCccuCGGCaGCGGACGGCucaCCUGGCgCCa -3'
miRNA:   3'- gaUGc--GCCG-CGCUUGUCG---GGGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 39687 0.66 0.750836
Target:  5'- gUGCaCGGCGCGuGCuggcgccGCCuuGGCgCCa -3'
miRNA:   3'- gAUGcGCCGCGCuUGu------CGGggCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 189022 0.66 0.741844
Target:  5'- aCUG-GCcGCGCGAACGcGCgUgGGCCCu -3'
miRNA:   3'- -GAUgCGcCGCGCUUGU-CGgGgCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 192755 0.66 0.741844
Target:  5'- -cGCGCGaGuCGCGuguuGACGGaCCCgGaGCCCa -3'
miRNA:   3'- gaUGCGC-C-GCGC----UUGUC-GGGgC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 191672 0.66 0.741844
Target:  5'- -gGCGUGGCGCacGCAGCgaccguaguuguCgCGGUCCg -3'
miRNA:   3'- gaUGCGCCGCGcuUGUCG------------GgGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 40540 0.66 0.741844
Target:  5'- gCUGC-CGGUGCGuuccACGGUCCUuGCCUg -3'
miRNA:   3'- -GAUGcGCCGCGCu---UGUCGGGGcCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.