miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1539 5' -60.1 NC_001347.2 + 107809 0.66 0.839941
Target:  5'- aUCGCgcuggaggaccUGCUGCCCaugcgacUGGCGUcC-CCGGAg -3'
miRNA:   3'- -AGCG-----------ACGACGGG-------GCCGCAaGaGGUCU- -5'
1539 5' -60.1 NC_001347.2 + 118521 0.66 0.816738
Target:  5'- -aGCUgGCgcagGCCCuCGGCGUaCUgCAGGc -3'
miRNA:   3'- agCGA-CGa---CGGG-GCCGCAaGAgGUCU- -5'
1539 5' -60.1 NC_001347.2 + 160741 0.66 0.799982
Target:  5'- gCGCUGgUGCCaggCGGUGcUCaCCAGAu -3'
miRNA:   3'- aGCGACgACGGg--GCCGCaAGaGGUCU- -5'
1539 5' -60.1 NC_001347.2 + 100881 0.67 0.791395
Target:  5'- gCGCgGCgcaGCgCCGGCcaUUCUCCGGGu -3'
miRNA:   3'- aGCGaCGa--CGgGGCCGc-AAGAGGUCU- -5'
1539 5' -60.1 NC_001347.2 + 192969 0.67 0.764883
Target:  5'- -aGCgGCgcGCCCCGGCGUUCagUCgCGGc -3'
miRNA:   3'- agCGaCGa-CGGGGCCGCAAG--AG-GUCu -5'
1539 5' -60.1 NC_001347.2 + 199599 0.67 0.759459
Target:  5'- gCGCUGCUguuaucgucgccaccGCCgCCGGCGccgUUCUCgGGc -3'
miRNA:   3'- aGCGACGA---------------CGG-GGCCGC---AAGAGgUCu -5'
1539 5' -60.1 NC_001347.2 + 198846 0.68 0.71867
Target:  5'- cCGgaGCaUGCCCCGGUgGUUCUCguuGAg -3'
miRNA:   3'- aGCgaCG-ACGGGGCCG-CAAGAGgu-CU- -5'
1539 5' -60.1 NC_001347.2 + 56439 0.68 0.690072
Target:  5'- cUCGUUGCUGCCgCGcGCGcca-CCAGAc -3'
miRNA:   3'- -AGCGACGACGGgGC-CGCaagaGGUCU- -5'
1539 5' -60.1 NC_001347.2 + 192137 0.68 0.687188
Target:  5'- gUCGUUGCcgGUCCCcguuuccuccGGCGUcgcgguuuccgccgUCUCCGGAu -3'
miRNA:   3'- -AGCGACGa-CGGGG----------CCGCA--------------AGAGGUCU- -5'
1539 5' -60.1 NC_001347.2 + 99363 0.71 0.567953
Target:  5'- -aGCUGCUGCCCCguaaagucaaauggcGGCGUggcgucagUCUCCc-- -3'
miRNA:   3'- agCGACGACGGGG---------------CCGCA--------AGAGGucu -5'
1539 5' -60.1 NC_001347.2 + 1656 0.74 0.402898
Target:  5'- aCGCUGCUGCCucagCCGGCGcUCcgaCAGAc -3'
miRNA:   3'- aGCGACGACGG----GGCCGCaAGag-GUCU- -5'
1539 5' -60.1 NC_001347.2 + 225492 1.09 0.001835
Target:  5'- aUCGCUGCUGCCCCGGCGUUCUCCAGAa -3'
miRNA:   3'- -AGCGACGACGGGGCCGCAAGAGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.