miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
15393	3'	-56	NC_003907.2	+	33708	0.66	0.584401
	Target:  5'- -uGUua-GGcACGUUAGCCCAgUCAGCa -3' miRNA:   3'- auCGucgCCaUGCGAUCGGGU-AGUCG- -5'
15393	3'	-56	NC_003907.2	+	25924	0.66	0.573211
	Target:  5'- aGGCA-CGGUugGCaGGaCCAagcUCAGCa -3' miRNA:   3'- aUCGUcGCCAugCGaUCgGGU---AGUCG- -5'
15393	3'	-56	NC_003907.2	+	6644	0.66	0.539979
	Target:  5'- gUGGUgauAGUGGUgaGCGC-AGCCUGUUAGUg -3' miRNA:   3'- -AUCG---UCGCCA--UGCGaUCGGGUAGUCG- -5'
15393	3'	-56	NC_003907.2	+	10318	0.67	0.518188
	Target:  5'- aGGCuuAGCGucaGUACGCUGGUCC-UUAGUu -3' miRNA:   3'- aUCG--UCGC---CAUGCGAUCGGGuAGUCG- -5'
15393	3'	-56	NC_003907.2	+	15800	0.69	0.396503
	Target:  5'- cAGCcccuugauGUGGUcgAUGCggucGCCCAUCAGCa -3' miRNA:   3'- aUCGu-------CGCCA--UGCGau--CGGGUAGUCG- -5'
15393	3'	-56	NC_003907.2	+	4880	0.69	0.387209
	Target:  5'- gAGCAGUgGGUACGCU-GCCCugaUGGUa -3' miRNA:   3'- aUCGUCG-CCAUGCGAuCGGGua-GUCG- -5'
15393	3'	-56	NC_003907.2	+	26127	0.72	0.252085
	Target:  5'- -cGCAGCGGUGaGCUGGCUgcuCGUCGuGCu -3' miRNA:   3'- auCGUCGCCAUgCGAUCGG---GUAGU-CG- -5'
15393	3'	-56	NC_003907.2	+	6756	1.11	0.000393
	Target:  5'- gUAGCAGCGGUACGCUAGCCCAUCAGCg -3' miRNA:   3'- -AUCGUCGCCAUGCGAUCGGGUAGUCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home