miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15393 3' -56 NC_003907.2 + 33708 0.66 0.584401
Target:  5'- -uGUua-GGcACGUUAGCCCAgUCAGCa -3'
miRNA:   3'- auCGucgCCaUGCGAUCGGGU-AGUCG- -5'
15393 3' -56 NC_003907.2 + 25924 0.66 0.573211
Target:  5'- aGGCA-CGGUugGCaGGaCCAagcUCAGCa -3'
miRNA:   3'- aUCGUcGCCAugCGaUCgGGU---AGUCG- -5'
15393 3' -56 NC_003907.2 + 6644 0.66 0.539979
Target:  5'- gUGGUgauAGUGGUgaGCGC-AGCCUGUUAGUg -3'
miRNA:   3'- -AUCG---UCGCCA--UGCGaUCGGGUAGUCG- -5'
15393 3' -56 NC_003907.2 + 10318 0.67 0.518188
Target:  5'- aGGCuuAGCGucaGUACGCUGGUCC-UUAGUu -3'
miRNA:   3'- aUCG--UCGC---CAUGCGAUCGGGuAGUCG- -5'
15393 3' -56 NC_003907.2 + 15800 0.69 0.396503
Target:  5'- cAGCcccuugauGUGGUcgAUGCggucGCCCAUCAGCa -3'
miRNA:   3'- aUCGu-------CGCCA--UGCGau--CGGGUAGUCG- -5'
15393 3' -56 NC_003907.2 + 4880 0.69 0.387209
Target:  5'- gAGCAGUgGGUACGCU-GCCCugaUGGUa -3'
miRNA:   3'- aUCGUCG-CCAUGCGAuCGGGua-GUCG- -5'
15393 3' -56 NC_003907.2 + 26127 0.72 0.252085
Target:  5'- -cGCAGCGGUGaGCUGGCUgcuCGUCGuGCu -3'
miRNA:   3'- auCGUCGCCAUgCGAUCGG---GUAGU-CG- -5'
15393 3' -56 NC_003907.2 + 6756 1.11 0.000393
Target:  5'- gUAGCAGCGGUACGCUAGCCCAUCAGCg -3'
miRNA:   3'- -AUCGUCGCCAUGCGAUCGGGUAGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.