miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15397 3' -55.7 NC_003907.2 + 21996 0.67 0.574568
Target:  5'- ---aAGGGaGGAGCuauuGCUCC-CCCu -3'
miRNA:   3'- cuacUCCC-CCUCGuuauCGAGGaGGG- -5'
15397 3' -55.7 NC_003907.2 + 45906 0.69 0.417932
Target:  5'- ---aAGGGGGaAGCGAUucGCUCuCUCCUu -3'
miRNA:   3'- cuacUCCCCC-UCGUUAu-CGAG-GAGGG- -5'
15397 3' -55.7 NC_003907.2 + 78 0.69 0.417932
Target:  5'- ---aAGGGGGaAGCGAUucGCUCuCUCCUu -3'
miRNA:   3'- cuacUCCCCC-UCGUUAu-CGAG-GAGGG- -5'
15397 3' -55.7 NC_003907.2 + 22069 0.98 0.003883
Target:  5'- gGAUGA-GGGGAGCAAUAGCUCCUCCCu -3'
miRNA:   3'- -CUACUcCCCCUCGUUAUCGAGGAGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.