miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15398 5' -51.1 NC_003907.2 + 2671 0.66 0.869435
Target:  5'- gACUGAacaacugugUGCUGUAUuCGGGGGCuGuACCa -3'
miRNA:   3'- aUGAUU---------GCGACGUAuGUUCCCG-C-UGG- -5'
15398 5' -51.1 NC_003907.2 + 15409 0.67 0.824268
Target:  5'- cACUGugGCguaacgaggaUGCAaccauccagaagUACAAGGGUuGCCg -3'
miRNA:   3'- aUGAUugCG----------ACGU------------AUGUUCCCGcUGG- -5'
15398 5' -51.1 NC_003907.2 + 6720 0.67 0.808565
Target:  5'- cACUAACagGCUGCGcucaccacUaucaccaccacggcaACAGGGGCaGACCa -3'
miRNA:   3'- aUGAUUG--CGACGU--------A---------------UGUUCCCG-CUGG- -5'
15398 5' -51.1 NC_003907.2 + 33341 0.68 0.773511
Target:  5'- aUGCUAAcuuCGCUGCAUAcCAAGauauCGACCc -3'
miRNA:   3'- -AUGAUU---GCGACGUAU-GUUCcc--GCUGG- -5'
15398 5' -51.1 NC_003907.2 + 33453 0.69 0.707405
Target:  5'- -cCUGACGCUGag-ACAGGGGauGCUa -3'
miRNA:   3'- auGAUUGCGACguaUGUUCCCgcUGG- -5'
15398 5' -51.1 NC_003907.2 + 19213 0.69 0.707405
Target:  5'- ---aGAUGUUGCAggugaGCAAGGGC-ACCa -3'
miRNA:   3'- augaUUGCGACGUa----UGUUCCCGcUGG- -5'
15398 5' -51.1 NC_003907.2 + 29054 0.98 0.011829
Target:  5'- cUACUAAC-CUGCAUACAAGGGCGACCc -3'
miRNA:   3'- -AUGAUUGcGACGUAUGUUCCCGCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.