miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 41406 0.73 0.439868
Target:  5'- aGGCCAcgGCCGCCGUguacaguuagaaCGUCCAU-CCGc -3'
miRNA:   3'- -CCGGUaaCGGCGGCG------------GCGGGUAuGGU- -5'
1540 3' -60.2 NC_001347.2 + 68043 0.72 0.457217
Target:  5'- cGCCGcucCCGCCGCCGCCaccGCCAc -3'
miRNA:   3'- cCGGUaacGGCGGCGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 97608 0.72 0.457217
Target:  5'- gGGCCggUGCUGCCGCCGUCguUGa-- -3'
miRNA:   3'- -CCGGuaACGGCGGCGGCGGguAUggu -5'
1540 3' -60.2 NC_001347.2 + 136281 0.72 0.502111
Target:  5'- -uCCA---CCGCCGCgGCCCAUGCCc -3'
miRNA:   3'- ccGGUaacGGCGGCGgCGGGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 197139 0.72 0.466028
Target:  5'- gGGCCcgccGUCGUCGCCGCCCcgggGCCc -3'
miRNA:   3'- -CCGGuaa-CGGCGGCGGCGGGua--UGGu -5'
1540 3' -60.2 NC_001347.2 + 2406 0.72 0.492971
Target:  5'- aGGCCGcgcgGCgGCUGCUGCCCGaGCUg -3'
miRNA:   3'- -CCGGUaa--CGgCGGCGGCGGGUaUGGu -5'
1540 3' -60.2 NC_001347.2 + 130903 0.72 0.474926
Target:  5'- aGCagcaGCCGCCGCCGCCaccACCAc -3'
miRNA:   3'- cCGguaaCGGCGGCGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 734 0.72 0.492971
Target:  5'- cGCCG-UGCaCGUCGCUGCCUAUaaaaGCCAg -3'
miRNA:   3'- cCGGUaACG-GCGGCGGCGGGUA----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 67360 0.71 0.520607
Target:  5'- cGCCGccGUCGCCGCCGCCUcggACUc -3'
miRNA:   3'- cCGGUaaCGGCGGCGGCGGGua-UGGu -5'
1540 3' -60.2 NC_001347.2 + 188156 0.71 0.520607
Target:  5'- uGGCaccgGCCGCCGaaGCCCAcgcUGCCc -3'
miRNA:   3'- -CCGguaaCGGCGGCggCGGGU---AUGGu -5'
1540 3' -60.2 NC_001347.2 + 112068 0.71 0.511325
Target:  5'- gGGCCcg-GCCGuuGCCGCCuCAgaacCCGa -3'
miRNA:   3'- -CCGGuaaCGGCggCGGCGG-GUau--GGU- -5'
1540 3' -60.2 NC_001347.2 + 165119 0.71 0.529955
Target:  5'- uGGUCGUUGUCGCUGCCGUguCCGcGCUu -3'
miRNA:   3'- -CCGGUAACGGCGGCGGCG--GGUaUGGu -5'
1540 3' -60.2 NC_001347.2 + 63243 0.71 0.529955
Target:  5'- cGGCCuccgcgGCCGCUG-CGCCCGccgugGCCAc -3'
miRNA:   3'- -CCGGuaa---CGGCGGCgGCGGGUa----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 163612 0.71 0.55263
Target:  5'- aGGCCAgugucagcgccgaGCCGCgGCUGCCCGggucgcgcACCAg -3'
miRNA:   3'- -CCGGUaa-----------CGGCGgCGGCGGGUa-------UGGU- -5'
1540 3' -60.2 NC_001347.2 + 85650 0.71 0.539364
Target:  5'- aGGCCA---CgGCCGCCGCgUCGUGCCu -3'
miRNA:   3'- -CCGGUaacGgCGGCGGCG-GGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 87589 0.71 0.539364
Target:  5'- uGGCCGUgagcaGaCCGCggUGCaCGCCCGUGCCc -3'
miRNA:   3'- -CCGGUAa----C-GGCG--GCG-GCGGGUAUGGu -5'
1540 3' -60.2 NC_001347.2 + 13531 0.71 0.520607
Target:  5'- cGGCCcggGCCGCCgugcuggaggGCCGCCCcacGCCc -3'
miRNA:   3'- -CCGGuaaCGGCGG----------CGGCGGGua-UGGu -5'
1540 3' -60.2 NC_001347.2 + 168340 0.71 0.520607
Target:  5'- uGGCgAUcaaGuCCGCCGCCGCCgCgGUGCCGc -3'
miRNA:   3'- -CCGgUAa--C-GGCGGCGGCGG-G-UAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 193649 0.71 0.539364
Target:  5'- gGGCCGagcugUGCCGCCGCucgcgcgccucCGCUCGcgGCCGc -3'
miRNA:   3'- -CCGGUa----ACGGCGGCG-----------GCGGGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 153770 0.71 0.558345
Target:  5'- cGCCAgugcGCCGUcgaCGCCGCUCAgGCCGu -3'
miRNA:   3'- cCGGUaa--CGGCG---GCGGCGGGUaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.