miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 76974 0.66 0.794519
Target:  5'- aGUC-UUGCCGgCGCC-CgCCGUGCCGg -3'
miRNA:   3'- cCGGuAACGGCgGCGGcG-GGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 178889 0.67 0.78586
Target:  5'- -cUCGUcGCCGCCGCUGCC---GCCGg -3'
miRNA:   3'- ccGGUAaCGGCGGCGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 69611 0.67 0.776191
Target:  5'- cGCCGcagcaUGCCGucccaguCCGCCGCCCAacUGCg- -3'
miRNA:   3'- cCGGUa----ACGGC-------GGCGGCGGGU--AUGgu -5'
1540 3' -60.2 NC_001347.2 + 105611 0.67 0.768175
Target:  5'- gGGCCAgugggaGCUGgUGCUGCCCuggaucguacccAUGCCAc -3'
miRNA:   3'- -CCGGUaa----CGGCgGCGGCGGG------------UAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 453 0.67 0.768175
Target:  5'- cGCUuuuAUUcGCCGUCGCCGUCCuccgcACCAc -3'
miRNA:   3'- cCGG---UAA-CGGCGGCGGCGGGua---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 168741 0.67 0.768175
Target:  5'- uGGCCcgUGcCCGCaGCUGCUC-UAUCAa -3'
miRNA:   3'- -CCGGuaAC-GGCGgCGGCGGGuAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 229932 0.67 0.768175
Target:  5'- cGCUuuuAUUcGCCGUCGCCGUCCuccgcACCAc -3'
miRNA:   3'- cCGG---UAA-CGGCGGCGGCGGGua---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 17331 0.67 0.768175
Target:  5'- cGCgGUUGCCGCgcguaugGCCGCCg--GCCAc -3'
miRNA:   3'- cCGgUAACGGCGg------CGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 195440 0.67 0.768175
Target:  5'- -cCCGUggaucaGCCGCCGCC-UCCAcUGCCAa -3'
miRNA:   3'- ccGGUAa-----CGGCGGCGGcGGGU-AUGGU- -5'
1540 3' -60.2 NC_001347.2 + 68071 0.67 0.759165
Target:  5'- -aCCAgcGCCGCCGCC-UCCAccACCAc -3'
miRNA:   3'- ccGGUaaCGGCGGCGGcGGGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 21624 0.67 0.759165
Target:  5'- uGCCA--GCCGUCGCCGCag--GCCu -3'
miRNA:   3'- cCGGUaaCGGCGGCGGCGgguaUGGu -5'
1540 3' -60.2 NC_001347.2 + 85981 0.67 0.759165
Target:  5'- uGCgA--GCCGCCGCCaCCCGaACCGu -3'
miRNA:   3'- cCGgUaaCGGCGGCGGcGGGUaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 200940 0.67 0.759165
Target:  5'- uGGCCcgUcGaccuuauccccaUCGUCGUCGCCUAUACCGg -3'
miRNA:   3'- -CCGGuaA-C------------GGCGGCGGCGGGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 181790 0.67 0.759165
Target:  5'- cGGCaCAUUauucCCGgCGCCGCCaacggCAUGCCGc -3'
miRNA:   3'- -CCG-GUAAc---GGCgGCGGCGG-----GUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 68174 0.67 0.740848
Target:  5'- gGGCCGUcgcgagucCCGCCGCUGCCac--CCAg -3'
miRNA:   3'- -CCGGUAac------GGCGGCGGCGGguauGGU- -5'
1540 3' -60.2 NC_001347.2 + 126319 0.67 0.740848
Target:  5'- gGGCCAggUGCUGCUGaCCaugGCCUAcUACCu -3'
miRNA:   3'- -CCGGUa-ACGGCGGC-GG---CGGGU-AUGGu -5'
1540 3' -60.2 NC_001347.2 + 56439 0.68 0.731557
Target:  5'- -cUCGUUGCUGCCGCgCGCgCC--ACCAg -3'
miRNA:   3'- ccGGUAACGGCGGCG-GCG-GGuaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 128325 0.68 0.730623
Target:  5'- cGGCUcgucgucacccgcGUgugGCCGCCGCUGCUCGagcACCu -3'
miRNA:   3'- -CCGG-------------UAa--CGGCGGCGGCGGGUa--UGGu -5'
1540 3' -60.2 NC_001347.2 + 92258 0.68 0.727818
Target:  5'- aGGCCGUgGCCGCCGCCaugaggcGCgUCAUggaagggauaucgcACCGa -3'
miRNA:   3'- -CCGGUAaCGGCGGCGG-------CG-GGUA--------------UGGU- -5'
1540 3' -60.2 NC_001347.2 + 185342 0.68 0.722188
Target:  5'- aGGuCCGUgcgagcagGCCGCCGCCGUggggGCCGc -3'
miRNA:   3'- -CC-GGUAa-------CGGCGGCGGCGgguaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.