miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 137635 0.69 0.983963
Target:  5'- uGCCGACAccaGAUggCGCucguugaccaggaaAGCUGUCUaCGCg -3'
miRNA:   3'- -CGGCUGU---UUA--GCG--------------UCGACAGAaGCGg -5'
1540 5' -51.3 NC_001347.2 + 142551 0.66 0.998213
Target:  5'- cGCCGGCGAAgaCGaGGCUGgCggCGUCg -3'
miRNA:   3'- -CGGCUGUUUa-GCgUCGACaGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 142616 0.7 0.967602
Target:  5'- uGCCGGCcAAaCGCAGCcgGUUguaacCGCCa -3'
miRNA:   3'- -CGGCUGuUUaGCGUCGa-CAGaa---GCGG- -5'
1540 5' -51.3 NC_001347.2 + 150636 0.66 0.997034
Target:  5'- cGCCGGCGGuacUGCGGCgGUUUcguaccagggCGCCa -3'
miRNA:   3'- -CGGCUGUUua-GCGUCGaCAGAa---------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 152128 0.66 0.998336
Target:  5'- cGCCGACAAGUacuuugaGCagguucucaaGGCUGUaacuaacgugcugUCGCCc -3'
miRNA:   3'- -CGGCUGUUUAg------CG----------UCGACAga-----------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 153011 0.69 0.975968
Target:  5'- gGUgGGCAGGaUGCGGUUGUCcUCGCa -3'
miRNA:   3'- -CGgCUGUUUaGCGUCGACAGaAGCGg -5'
1540 5' -51.3 NC_001347.2 + 153281 0.66 0.997874
Target:  5'- gGCCGACGuagCGCcGUUcaccGUCgaCGCCa -3'
miRNA:   3'- -CGGCUGUuuaGCGuCGA----CAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 156678 0.66 0.997874
Target:  5'- uGgCGGCGGGUCGUggcGGCUGUg-UCGUUg -3'
miRNA:   3'- -CgGCUGUUUAGCG---UCGACAgaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 161880 0.78 0.664571
Target:  5'- cGCCGACAGGUacgGCAGUUGUugcguggCUUUGCCc -3'
miRNA:   3'- -CGGCUGUUUAg--CGUCGACA-------GAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 163286 0.69 0.985216
Target:  5'- aCUGACGgcgucaaaaaacgucGGUCGCGGCgacucGUCgcgCGCCa -3'
miRNA:   3'- cGGCUGU---------------UUAGCGUCGa----CAGaa-GCGG- -5'
1540 5' -51.3 NC_001347.2 + 163369 0.71 0.940538
Target:  5'- cGuuGAUGAGUCGCAGacgcGUCUguUCGUCg -3'
miRNA:   3'- -CggCUGUUUAGCGUCga--CAGA--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 166065 0.66 0.997874
Target:  5'- uGCgGA---GUCGCGGCgGUUggggCGCCg -3'
miRNA:   3'- -CGgCUguuUAGCGUCGaCAGaa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 168262 0.66 0.998213
Target:  5'- cCCGGCGGAccaGCGGCUG-CUg-GCCc -3'
miRNA:   3'- cGGCUGUUUag-CGUCGACaGAagCGG- -5'
1540 5' -51.3 NC_001347.2 + 172542 0.71 0.957356
Target:  5'- cGCUGGCucggCGCGGCUGUauuauuagaCGCCg -3'
miRNA:   3'- -CGGCUGuuuaGCGUCGACAgaa------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 175006 0.69 0.978369
Target:  5'- uGCCgGugGAGUCGCAGCag----CGCCu -3'
miRNA:   3'- -CGG-CugUUUAGCGUCGacagaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 178742 0.68 0.987798
Target:  5'- cCCGGCGcaacgGguGCUGUCcgCGCCg -3'
miRNA:   3'- cGGCUGUuuag-CguCGACAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 182862 0.67 0.99652
Target:  5'- cGCCGugGGAUCgGCuucgagaucgAGCUGggcCUcgcgcggcUCGCCg -3'
miRNA:   3'- -CGGCugUUUAG-CG----------UCGACa--GA--------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 184215 0.69 0.975968
Target:  5'- uGCCG-CAGggcgGUCGCuAGCgUGUCgcagcgUUCGCCg -3'
miRNA:   3'- -CGGCuGUU----UAGCG-UCG-ACAG------AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 189698 0.67 0.993681
Target:  5'- cCCGcCAcAUCGCcGCUGUCcaugcuUUCGUCa -3'
miRNA:   3'- cGGCuGUuUAGCGuCGACAG------AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 190772 0.68 0.990518
Target:  5'- -gUGACGGGUUGCGGCUGaa-UCGCa -3'
miRNA:   3'- cgGCUGUUUAGCGUCGACagaAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.