Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1540 | 5' | -51.3 | NC_001347.2 | + | 192979 | 0.67 | 0.99652 |
Target: 5'- cCCGGCGuucAGUCGCGGCUGag--CGUg -3' miRNA: 3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 193081 | 0.66 | 0.997483 |
Target: 5'- uGCCGGCAuguccggccGUCGCaagGGCUGcUCggCgGCCa -3' miRNA: 3'- -CGGCUGUu--------UAGCG---UCGAC-AGaaG-CGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 194468 | 0.66 | 0.997483 |
Target: 5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3' miRNA: 3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 195614 | 0.7 | 0.967602 |
Target: 5'- cGCCGAUucguAAUCGacaggaGGCUGUgcgCGCCg -3' miRNA: 3'- -CGGCUGu---UUAGCg-----UCGACAgaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 196509 | 0.67 | 0.993681 |
Target: 5'- cGCCGACuGGUCGCAgacGCUGaUCgaCGaCUa -3' miRNA: 3'- -CGGCUGuUUAGCGU---CGAC-AGaaGC-GG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 196887 | 0.67 | 0.994523 |
Target: 5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3' miRNA: 3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 197624 | 0.71 | 0.945092 |
Target: 5'- cGCCGACucgcugcCGCAGCUG-CUggagCGCg -3' miRNA: 3'- -CGGCUGuuua---GCGUCGACaGAa---GCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 198998 | 0.68 | 0.992738 |
Target: 5'- uGCCG-CGAugcCGCAGC--UCUUCGUCc -3' miRNA: 3'- -CGGCuGUUua-GCGUCGacAGAAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 202998 | 0.68 | 0.992738 |
Target: 5'- uGCUGACGAAcgCGUcuGGCUGUg--UGCCg -3' miRNA: 3'- -CGGCUGUUUa-GCG--UCGACAgaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 208041 | 0.75 | 0.810447 |
Target: 5'- aCCGACGucggAGUCGCGGCguucGUUggCGCCg -3' miRNA: 3'- cGGCUGU----UUAGCGUCGa---CAGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 208459 | 0.67 | 0.995935 |
Target: 5'- uGCCGGCGgc-UGCAGUUGUUgucCGCa -3' miRNA: 3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 208724 | 0.67 | 0.994523 |
Target: 5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3' miRNA: 3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 222411 | 0.68 | 0.991687 |
Target: 5'- gGCCGugGAgaggcGUCGCcGC-GUCUcguUCGUCg -3' miRNA: 3'- -CGGCugUU-----UAGCGuCGaCAGA---AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 222796 | 1.15 | 0.005214 |
Target: 5'- gGCCGACAAAUCGCAGCUGUCUUCGCCg -3' miRNA: 3'- -CGGCUGUUUAGCGUCGACAGAAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 225525 | 0.71 | 0.953497 |
Target: 5'- gGCgGGCGAAUCGgcCGGCUGg--UCGUCg -3' miRNA: 3'- -CGgCUGUUUAGC--GUCGACagaAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 226763 | 0.66 | 0.997606 |
Target: 5'- cGUCGGCAugccgcuGAUCGCAGUggccccaccucggcaUGcCggCGCCg -3' miRNA: 3'- -CGGCUGU-------UUAGCGUCG---------------ACaGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 228687 | 0.76 | 0.755189 |
Target: 5'- aGUCGGCGucaaAGUCGCuugcGCUGUCggcccagUCGCCa -3' miRNA: 3'- -CGGCUGU----UUAGCGu---CGACAGa------AGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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