Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1540 | 5' | -51.3 | NC_001347.2 | + | 182862 | 0.67 | 0.99652 |
Target: 5'- cGCCGugGGAUCgGCuucgagaucgAGCUGggcCUcgcgcggcUCGCCg -3' miRNA: 3'- -CGGCugUUUAG-CG----------UCGACa--GA--------AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 178742 | 0.68 | 0.987798 |
Target: 5'- cCCGGCGcaacgGguGCUGUCcgCGCCg -3' miRNA: 3'- cGGCUGUuuag-CguCGACAGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 175006 | 0.69 | 0.978369 |
Target: 5'- uGCCgGugGAGUCGCAGCag----CGCCu -3' miRNA: 3'- -CGG-CugUUUAGCGUCGacagaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 172542 | 0.71 | 0.957356 |
Target: 5'- cGCUGGCucggCGCGGCUGUauuauuagaCGCCg -3' miRNA: 3'- -CGGCUGuuuaGCGUCGACAgaa------GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 168262 | 0.66 | 0.998213 |
Target: 5'- cCCGGCGGAccaGCGGCUG-CUg-GCCc -3' miRNA: 3'- cGGCUGUUUag-CGUCGACaGAagCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 166065 | 0.66 | 0.997874 |
Target: 5'- uGCgGA---GUCGCGGCgGUUggggCGCCg -3' miRNA: 3'- -CGgCUguuUAGCGUCGaCAGaa--GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 163369 | 0.71 | 0.940538 |
Target: 5'- cGuuGAUGAGUCGCAGacgcGUCUguUCGUCg -3' miRNA: 3'- -CggCUGUUUAGCGUCga--CAGA--AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 163286 | 0.69 | 0.985216 |
Target: 5'- aCUGACGgcgucaaaaaacgucGGUCGCGGCgacucGUCgcgCGCCa -3' miRNA: 3'- cGGCUGU---------------UUAGCGUCGa----CAGaa-GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 161880 | 0.78 | 0.664571 |
Target: 5'- cGCCGACAGGUacgGCAGUUGUugcguggCUUUGCCc -3' miRNA: 3'- -CGGCUGUUUAg--CGUCGACA-------GAAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 156678 | 0.66 | 0.997874 |
Target: 5'- uGgCGGCGGGUCGUggcGGCUGUg-UCGUUg -3' miRNA: 3'- -CgGCUGUUUAGCG---UCGACAgaAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 153281 | 0.66 | 0.997874 |
Target: 5'- gGCCGACGuagCGCcGUUcaccGUCgaCGCCa -3' miRNA: 3'- -CGGCUGUuuaGCGuCGA----CAGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 153011 | 0.69 | 0.975968 |
Target: 5'- gGUgGGCAGGaUGCGGUUGUCcUCGCa -3' miRNA: 3'- -CGgCUGUUUaGCGUCGACAGaAGCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 152128 | 0.66 | 0.998336 |
Target: 5'- cGCCGACAAGUacuuugaGCagguucucaaGGCUGUaacuaacgugcugUCGCCc -3' miRNA: 3'- -CGGCUGUUUAg------CG----------UCGACAga-----------AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 150636 | 0.66 | 0.997034 |
Target: 5'- cGCCGGCGGuacUGCGGCgGUUUcguaccagggCGCCa -3' miRNA: 3'- -CGGCUGUUua-GCGUCGaCAGAa---------GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 142616 | 0.7 | 0.967602 |
Target: 5'- uGCCGGCcAAaCGCAGCcgGUUguaacCGCCa -3' miRNA: 3'- -CGGCUGuUUaGCGUCGa-CAGaa---GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 142551 | 0.66 | 0.998213 |
Target: 5'- cGCCGGCGAAgaCGaGGCUGgCggCGUCg -3' miRNA: 3'- -CGGCUGUUUa-GCgUCGACaGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 137635 | 0.69 | 0.983963 |
Target: 5'- uGCCGACAccaGAUggCGCucguugaccaggaaAGCUGUCUaCGCg -3' miRNA: 3'- -CGGCUGU---UUA--GCG--------------UCGACAGAaGCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 126934 | 0.67 | 0.993681 |
Target: 5'- uUCGGCAccuccaCGCAGCUGgcg-CGCCa -3' miRNA: 3'- cGGCUGUuua---GCGUCGACagaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 126019 | 0.72 | 0.92545 |
Target: 5'- -gCGGCGGGUgGC-GCccGUCUUCGCCg -3' miRNA: 3'- cgGCUGUUUAgCGuCGa-CAGAAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 125727 | 0.69 | 0.980587 |
Target: 5'- cGCCuGCAGcucgCGCAGCUcccGUCcUCGCUa -3' miRNA: 3'- -CGGcUGUUua--GCGUCGA---CAGaAGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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