miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 152128 0.66 0.998336
Target:  5'- cGCCGACAAGUacuuugaGCagguucucaaGGCUGUaacuaacgugcugUCGCCc -3'
miRNA:   3'- -CGGCUGUUUAg------CG----------UCGACAga-----------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 168262 0.66 0.998213
Target:  5'- cCCGGCGGAccaGCGGCUG-CUg-GCCc -3'
miRNA:   3'- cGGCUGUUUag-CGUCGACaGAagCGG- -5'
1540 5' -51.3 NC_001347.2 + 83169 0.66 0.998506
Target:  5'- cGCCGuguuCA---UGCAGCUcGUCUUUuuaGCCg -3'
miRNA:   3'- -CGGCu---GUuuaGCGUCGA-CAGAAG---CGG- -5'
1540 5' -51.3 NC_001347.2 + 54486 0.66 0.998478
Target:  5'- cGCCGACuaaauucauGUCGCGcgauaguGgUGUUUaUCGCCg -3'
miRNA:   3'- -CGGCUGuu-------UAGCGU-------CgACAGA-AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 91406 0.66 0.998506
Target:  5'- uGCUGGCcAAUCGCGuGCUGcaguaccucaUCcaCGCCu -3'
miRNA:   3'- -CGGCUGuUUAGCGU-CGAC----------AGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 194468 0.66 0.997483
Target:  5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3'
miRNA:   3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 40669 0.66 0.997483
Target:  5'- gGCCGGgGAcggggGUUGCgcuggggccggGGCUGUUcgCGCCg -3'
miRNA:   3'- -CGGCUgUU-----UAGCG-----------UCGACAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 42898 0.67 0.993681
Target:  5'- cGgCGACGGAgaGgAGCUGUCcgcCGCCg -3'
miRNA:   3'- -CgGCUGUUUagCgUCGACAGaa-GCGG- -5'
1540 5' -51.3 NC_001347.2 + 189698 0.67 0.993681
Target:  5'- cCCGcCAcAUCGCcGCUGUCcaugcuUUCGUCa -3'
miRNA:   3'- cGGCuGUuUAGCGuCGACAG------AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 196509 0.67 0.993681
Target:  5'- cGCCGACuGGUCGCAgacGCUGaUCgaCGaCUa -3'
miRNA:   3'- -CGGCUGuUUAGCGU---CGAC-AGaaGC-GG- -5'
1540 5' -51.3 NC_001347.2 + 208724 0.67 0.994523
Target:  5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3'
miRNA:   3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 196887 0.67 0.994523
Target:  5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3'
miRNA:   3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5'
1540 5' -51.3 NC_001347.2 + 85250 0.67 0.9952
Target:  5'- aGCCGGCcca--GCAGCucgggcgUGUUUUCGUCc -3'
miRNA:   3'- -CGGCUGuuuagCGUCG-------ACAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 88341 0.67 0.995935
Target:  5'- aGCCGugGuaaccGUCGCcGCUGgCggCGCUg -3'
miRNA:   3'- -CGGCugUu----UAGCGuCGACaGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 208459 0.67 0.995935
Target:  5'- uGCCGGCGgc-UGCAGUUGUUgucCGCa -3'
miRNA:   3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 182862 0.67 0.99652
Target:  5'- cGCCGugGGAUCgGCuucgagaucgAGCUGggcCUcgcgcggcUCGCCg -3'
miRNA:   3'- -CGGCugUUUAG-CG----------UCGACa--GA--------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 66517 0.67 0.99652
Target:  5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3'
miRNA:   3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 192979 0.67 0.99652
Target:  5'- cCCGGCGuucAGUCGCGGCUGag--CGUg -3'
miRNA:   3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5'
1540 5' -51.3 NC_001347.2 + 38754 0.66 0.997034
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 150636 0.66 0.997034
Target:  5'- cGCCGGCGGuacUGCGGCgGUUUcguaccagggCGCCa -3'
miRNA:   3'- -CGGCUGUUua-GCGUCGaCAGAa---------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.