Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1540 | 5' | -51.3 | NC_001347.2 | + | 152128 | 0.66 | 0.998336 |
Target: 5'- cGCCGACAAGUacuuugaGCagguucucaaGGCUGUaacuaacgugcugUCGCCc -3' miRNA: 3'- -CGGCUGUUUAg------CG----------UCGACAga-----------AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 168262 | 0.66 | 0.998213 |
Target: 5'- cCCGGCGGAccaGCGGCUG-CUg-GCCc -3' miRNA: 3'- cGGCUGUUUag-CGUCGACaGAagCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 83169 | 0.66 | 0.998506 |
Target: 5'- cGCCGuguuCA---UGCAGCUcGUCUUUuuaGCCg -3' miRNA: 3'- -CGGCu---GUuuaGCGUCGA-CAGAAG---CGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 54486 | 0.66 | 0.998478 |
Target: 5'- cGCCGACuaaauucauGUCGCGcgauaguGgUGUUUaUCGCCg -3' miRNA: 3'- -CGGCUGuu-------UAGCGU-------CgACAGA-AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 91406 | 0.66 | 0.998506 |
Target: 5'- uGCUGGCcAAUCGCGuGCUGcaguaccucaUCcaCGCCu -3' miRNA: 3'- -CGGCUGuUUAGCGU-CGAC----------AGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 194468 | 0.66 | 0.997483 |
Target: 5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3' miRNA: 3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 40669 | 0.66 | 0.997483 |
Target: 5'- gGCCGGgGAcggggGUUGCgcuggggccggGGCUGUUcgCGCCg -3' miRNA: 3'- -CGGCUgUU-----UAGCG-----------UCGACAGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 42898 | 0.67 | 0.993681 |
Target: 5'- cGgCGACGGAgaGgAGCUGUCcgcCGCCg -3' miRNA: 3'- -CgGCUGUUUagCgUCGACAGaa-GCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 189698 | 0.67 | 0.993681 |
Target: 5'- cCCGcCAcAUCGCcGCUGUCcaugcuUUCGUCa -3' miRNA: 3'- cGGCuGUuUAGCGuCGACAG------AAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 196509 | 0.67 | 0.993681 |
Target: 5'- cGCCGACuGGUCGCAgacGCUGaUCgaCGaCUa -3' miRNA: 3'- -CGGCUGuUUAGCGU---CGAC-AGaaGC-GG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 208724 | 0.67 | 0.994523 |
Target: 5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3' miRNA: 3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 196887 | 0.67 | 0.994523 |
Target: 5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3' miRNA: 3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 85250 | 0.67 | 0.9952 |
Target: 5'- aGCCGGCcca--GCAGCucgggcgUGUUUUCGUCc -3' miRNA: 3'- -CGGCUGuuuagCGUCG-------ACAGAAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 88341 | 0.67 | 0.995935 |
Target: 5'- aGCCGugGuaaccGUCGCcGCUGgCggCGCUg -3' miRNA: 3'- -CGGCugUu----UAGCGuCGACaGaaGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 208459 | 0.67 | 0.995935 |
Target: 5'- uGCCGGCGgc-UGCAGUUGUUgucCGCa -3' miRNA: 3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 182862 | 0.67 | 0.99652 |
Target: 5'- cGCCGugGGAUCgGCuucgagaucgAGCUGggcCUcgcgcggcUCGCCg -3' miRNA: 3'- -CGGCugUUUAG-CG----------UCGACa--GA--------AGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 66517 | 0.67 | 0.99652 |
Target: 5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3' miRNA: 3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 192979 | 0.67 | 0.99652 |
Target: 5'- cCCGGCGuucAGUCGCGGCUGag--CGUg -3' miRNA: 3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 38754 | 0.66 | 0.997034 |
Target: 5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3' miRNA: 3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5' |
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1540 | 5' | -51.3 | NC_001347.2 | + | 150636 | 0.66 | 0.997034 |
Target: 5'- cGCCGGCGGuacUGCGGCgGUUUcguaccagggCGCCa -3' miRNA: 3'- -CGGCUGUUua-GCGUCGaCAGAa---------GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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