miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 192979 0.67 0.99652
Target:  5'- cCCGGCGuucAGUCGCGGCUGag--CGUg -3'
miRNA:   3'- cGGCUGU---UUAGCGUCGACagaaGCGg -5'
1540 5' -51.3 NC_001347.2 + 208459 0.67 0.995935
Target:  5'- uGCCGGCGgc-UGCAGUUGUUgucCGCa -3'
miRNA:   3'- -CGGCUGUuuaGCGUCGACAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 88341 0.67 0.995935
Target:  5'- aGCCGugGuaaccGUCGCcGCUGgCggCGCUg -3'
miRNA:   3'- -CGGCugUu----UAGCGuCGACaGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 85250 0.67 0.9952
Target:  5'- aGCCGGCcca--GCAGCucgggcgUGUUUUCGUCc -3'
miRNA:   3'- -CGGCUGuuuagCGUCG-------ACAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 196887 0.67 0.994523
Target:  5'- cCCGACuac-CGCAGCgUGUCgcugCGCa -3'
miRNA:   3'- cGGCUGuuuaGCGUCG-ACAGaa--GCGg -5'
1540 5' -51.3 NC_001347.2 + 208724 0.67 0.994523
Target:  5'- cGCCGugGucucGGUCGCcaGGCUguggGUCUcgUUGCCc -3'
miRNA:   3'- -CGGCugU----UUAGCG--UCGA----CAGA--AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 126934 0.67 0.993681
Target:  5'- uUCGGCAccuccaCGCAGCUGgcg-CGCCa -3'
miRNA:   3'- cGGCUGUuua---GCGUCGACagaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 33416 0.67 0.993681
Target:  5'- uGCCGACccc-CGguGagcgGUCUUCGCg -3'
miRNA:   3'- -CGGCUGuuuaGCguCga--CAGAAGCGg -5'
1540 5' -51.3 NC_001347.2 + 42898 0.67 0.993681
Target:  5'- cGgCGACGGAgaGgAGCUGUCcgcCGCCg -3'
miRNA:   3'- -CgGCUGUUUagCgUCGACAGaa-GCGG- -5'
1540 5' -51.3 NC_001347.2 + 189698 0.67 0.993681
Target:  5'- cCCGcCAcAUCGCcGCUGUCcaugcuUUCGUCa -3'
miRNA:   3'- cGGCuGUuUAGCGuCGACAG------AAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 196509 0.67 0.993681
Target:  5'- cGCCGACuGGUCGCAgacGCUGaUCgaCGaCUa -3'
miRNA:   3'- -CGGCUGuUUAGCGU---CGAC-AGaaGC-GG- -5'
1540 5' -51.3 NC_001347.2 + 25379 0.68 0.993128
Target:  5'- cGCCGugGGuUgGCAGCUGgccggCUUgaccgcguuguugagCGCCu -3'
miRNA:   3'- -CGGCugUUuAgCGUCGACa----GAA---------------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 75975 0.68 0.992738
Target:  5'- -gCGGCGAGUCGCccAGCggGUCg--GCCa -3'
miRNA:   3'- cgGCUGUUUAGCG--UCGa-CAGaagCGG- -5'
1540 5' -51.3 NC_001347.2 + 198998 0.68 0.992738
Target:  5'- uGCCG-CGAugcCGCAGC--UCUUCGUCc -3'
miRNA:   3'- -CGGCuGUUua-GCGUCGacAGAAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 202998 0.68 0.992738
Target:  5'- uGCUGACGAAcgCGUcuGGCUGUg--UGCCg -3'
miRNA:   3'- -CGGCUGUUUa-GCG--UCGACAgaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 54266 0.68 0.991687
Target:  5'- -aCGACAAggCGCAGUaccUG-CUgggCGCCg -3'
miRNA:   3'- cgGCUGUUuaGCGUCG---ACaGAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 222411 0.68 0.991687
Target:  5'- gGCCGugGAgaggcGUCGCcGC-GUCUcguUCGUCg -3'
miRNA:   3'- -CGGCugUU-----UAGCGuCGaCAGA---AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 12633 0.68 0.991687
Target:  5'- gGUgGGCGAAUCGCuacccuccGGC-GUCUUucaCGCCg -3'
miRNA:   3'- -CGgCUGUUUAGCG--------UCGaCAGAA---GCGG- -5'
1540 5' -51.3 NC_001347.2 + 25722 0.68 0.991687
Target:  5'- cGCCGuCAGAUCGUGGUcGUCcaUGCUu -3'
miRNA:   3'- -CGGCuGUUUAGCGUCGaCAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 115029 0.68 0.990518
Target:  5'- uGCCGuCAccGUCGCGuccgacgcgacGgUGUUUUCGCCg -3'
miRNA:   3'- -CGGCuGUu-UAGCGU-----------CgACAGAAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.