miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15403 5' -54.5 NC_003907.2 + 19935 0.66 0.713669
Target:  5'- gCCGUGCUGuuGGCuacACCGgaCGUgUGCa -3'
miRNA:   3'- aGGCGCGAU--CUGu--UGGCgaGCAgAUG- -5'
15403 5' -54.5 NC_003907.2 + 26129 0.67 0.658211
Target:  5'- aCCGCaGCggugAGcUGGCUGCUCGUCgUGCu -3'
miRNA:   3'- aGGCG-CGa---UCuGUUGGCGAGCAG-AUG- -5'
15403 5' -54.5 NC_003907.2 + 34688 0.69 0.53466
Target:  5'- -gUGCGCUGGACAguuaaggACCGUccUCG-CUGCu -3'
miRNA:   3'- agGCGCGAUCUGU-------UGGCG--AGCaGAUG- -5'
15403 5' -54.5 NC_003907.2 + 43850 1.11 0.000664
Target:  5'- aUCCGCGCUAGACAACCGCUCGUCUACa -3'
miRNA:   3'- -AGGCGCGAUCUGUUGGCGAGCAGAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.