miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1541 5' -58.4 NC_001347.2 + 197618 0.66 0.889976
Target:  5'- gCG-CGccGCCGAcUCG-CUGCCGCAg -3'
miRNA:   3'- aGCaGCucCGGCU-AGCuGACGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 165882 0.66 0.883391
Target:  5'- aUGUCGAgccggcgggcgGGUCGAUCGAagacaagaugucCUGCUGCGc -3'
miRNA:   3'- aGCAGCU-----------CCGGCUAGCU------------GACGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 182296 0.66 0.876601
Target:  5'- gCGUCGuuGCCGGggCGGCUGCUcCAg -3'
miRNA:   3'- aGCAGCucCGGCUa-GCUGACGGcGUa -5'
1541 5' -58.4 NC_001347.2 + 112061 0.66 0.876601
Target:  5'- cCGUCGAGGgcCCGGcCG-UUGCCGCc- -3'
miRNA:   3'- aGCAGCUCC--GGCUaGCuGACGGCGua -5'
1541 5' -58.4 NC_001347.2 + 208062 0.66 0.875911
Target:  5'- uUCGUUGGcGCCGcugccgcGUCGgguaccGCUGCCGCAg -3'
miRNA:   3'- -AGCAGCUcCGGC-------UAGC------UGACGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 113650 0.67 0.862423
Target:  5'- gCGa-GAGGCCGG-CGuaGCUGCCGCu- -3'
miRNA:   3'- aGCagCUCCGGCUaGC--UGACGGCGua -5'
1541 5' -58.4 NC_001347.2 + 88352 0.67 0.862423
Target:  5'- cCGUCGccGCUGG-CGgcGCUGCCGCGa -3'
miRNA:   3'- aGCAGCucCGGCUaGC--UGACGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 84619 0.67 0.847481
Target:  5'- cCGUCGuggguGGCCucgcggUGGCUGCCGCu- -3'
miRNA:   3'- aGCAGCu----CCGGcua---GCUGACGGCGua -5'
1541 5' -58.4 NC_001347.2 + 154625 0.67 0.846714
Target:  5'- gUCGUCGAuGCgcaGAUCGgaaaaguGCUGCUGCAg -3'
miRNA:   3'- -AGCAGCUcCGg--CUAGC-------UGACGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 189130 0.67 0.839737
Target:  5'- cUCG--GAGGCCG-UCGACUccacgcGCCGCGg -3'
miRNA:   3'- -AGCagCUCCGGCuAGCUGA------CGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 112473 0.67 0.839737
Target:  5'- uUCGUcCGAGGacgaCGA-CGACgccGCCGCGg -3'
miRNA:   3'- -AGCA-GCUCCg---GCUaGCUGa--CGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 225912 0.68 0.807092
Target:  5'- -gGUCGGcGGCCGGUCGGCUuCUGUu- -3'
miRNA:   3'- agCAGCU-CCGGCUAGCUGAcGGCGua -5'
1541 5' -58.4 NC_001347.2 + 38237 0.69 0.772115
Target:  5'- cCGUCGGcGCCGcugCuGCUGCCGCGUc -3'
miRNA:   3'- aGCAGCUcCGGCua-GcUGACGGCGUA- -5'
1541 5' -58.4 NC_001347.2 + 135604 0.69 0.772115
Target:  5'- cCGUCGucGUCGGcCGACcGCCGCGa -3'
miRNA:   3'- aGCAGCucCGGCUaGCUGaCGGCGUa -5'
1541 5' -58.4 NC_001347.2 + 62970 0.7 0.668011
Target:  5'- gUCG-CGAGGUCGAUCGGCaaaCCGUAc -3'
miRNA:   3'- -AGCaGCUCCGGCUAGCUGac-GGCGUa -5'
1541 5' -58.4 NC_001347.2 + 97601 0.71 0.638613
Target:  5'- gUGUCuGGGGCCGGU--GCUGCCGCc- -3'
miRNA:   3'- aGCAG-CUCCGGCUAgcUGACGGCGua -5'
1541 5' -58.4 NC_001347.2 + 2400 0.73 0.494404
Target:  5'- cCGcCGAGGCCGcgcggCGGCUGCUGCc- -3'
miRNA:   3'- aGCaGCUCCGGCua---GCUGACGGCGua -5'
1541 5' -58.4 NC_001347.2 + 68731 0.75 0.398603
Target:  5'- cUCGUCgGAGGCCGuggagCGAgUGCCGCc- -3'
miRNA:   3'- -AGCAG-CUCCGGCua---GCUgACGGCGua -5'
1541 5' -58.4 NC_001347.2 + 222439 1.06 0.004049
Target:  5'- uUCGUCGAGGCCGAUCGACUGCCGCAUg -3'
miRNA:   3'- -AGCAGCUCCGGCUAGCUGACGGCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.