Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 19839 | 0.66 | 0.996544 |
|
Target: 5'- aCGGc-AUCUACAuCGGAUGCGAcGCAg -3' miRNA: 3'- -GCUuuUAGGUGUuGCUUACGUU-CGUg -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 13824 | 0.66 | 0.99504 |
|
Target: 5'- uCGggGuguacAUCUGgGAUGAggaGUGUAAGCACg -3' miRNA: 3'- -GCuuU-----UAGGUgUUGCU---UACGUUCGUG- -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 28551 | 0.67 | 0.990452 |
|
Target: 5'- aGAuuAUCCGCAAgguggcugaGGAUGCAguggcagacacaAGCGCa -3' miRNA: 3'- gCUuuUAGGUGUUg--------CUUACGU------------UCGUG- -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 5533 | 0.67 | 0.990452 |
|
Target: 5'- ----cAUCCAucuCAGCGAAUGCAAagucGUACa -3' miRNA: 3'- gcuuuUAGGU---GUUGCUUACGUU----CGUG- -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 21187 | 0.68 | 0.987156 |
|
Target: 5'- -cGAAGUCCAUcgcugcgauAGCGAAUG-GAGCACc -3' miRNA: 3'- gcUUUUAGGUG---------UUGCUUACgUUCGUG- -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 29940 | 0.71 | 0.941457 |
|
Target: 5'- uGAAGA--CGCAGCGAA-GCAGGCAg -3' miRNA: 3'- gCUUUUagGUGUUGCUUaCGUUCGUg -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 33597 | 0.75 | 0.791673 |
|
Target: 5'- -----uUCCAU--CGAGUGCAGGCACa -3' miRNA: 3'- gcuuuuAGGUGuuGCUUACGUUCGUG- -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 37410 | 0.75 | 0.791673 |
|
Target: 5'- ------gCCACAACGAAUGguAGCAa -3' miRNA: 3'- gcuuuuaGGUGUUGCUUACguUCGUg -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 4605 | 0.77 | 0.688459 |
|
Target: 5'- uGAGAGUUaggACGACGAcggcacucgAUGCGAGCACg -3' miRNA: 3'- gCUUUUAGg--UGUUGCU---------UACGUUCGUG- -5' |
|||||||
| 15416 | 5' | -44.8 | NC_003907.2 | + | 42527 | 1.13 | 0.0056 |
|
Target: 5'- gCGAAAAUCCACAACGAAUGCAAGCACg -3' miRNA: 3'- -GCUUUUAGGUGUUGCUUACGUUCGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home