miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1542 3' -52.1 NC_001347.2 + 813 0.71 0.907168
Target:  5'- aACCGCGUGCuc-GCugACGCGGGUuuGCu -3'
miRNA:   3'- gUGGCGCACGuaaUG--UGCGCCUA--UGu -5'
1542 3' -52.1 NC_001347.2 + 53739 0.73 0.866157
Target:  5'- aGCCGCGUGC------CGCGGGUGCGc -3'
miRNA:   3'- gUGGCGCACGuaauguGCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 199232 0.75 0.762983
Target:  5'- uCACCGCGUGCGUgauuauccgACGCGUGaGAUcGCGc -3'
miRNA:   3'- -GUGGCGCACGUAa--------UGUGCGC-CUA-UGU- -5'
1542 3' -52.1 NC_001347.2 + 48029 0.79 0.551571
Target:  5'- -uCCGCGUGUAaUGCACGCGGuGUGCu -3'
miRNA:   3'- guGGCGCACGUaAUGUGCGCC-UAUGu -5'
1542 3' -52.1 NC_001347.2 + 221857 1.09 0.010058
Target:  5'- aCACCGCGUGCAUUACACGCGGAUACAu -3'
miRNA:   3'- -GUGGCGCACGUAAUGUGCGCCUAUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.