Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1542 | 3' | -52.1 | NC_001347.2 | + | 203905 | 0.69 | 0.970126 |
Target: 5'- cCGCCGCGUGCGgauagGCACcUGGAcuuCAa -3' miRNA: 3'- -GUGGCGCACGUaa---UGUGcGCCUau-GU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 205573 | 0.67 | 0.991517 |
Target: 5'- uUACCGUGUGUA--ACGCGCaGGUGu- -3' miRNA: 3'- -GUGGCGCACGUaaUGUGCGcCUAUgu -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 206933 | 0.66 | 0.995841 |
Target: 5'- aGCaGCGUGaaCGUUGCACGUGGccuuUGCGg -3' miRNA: 3'- gUGgCGCAC--GUAAUGUGCGCCu---AUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 221857 | 1.09 | 0.010058 |
Target: 5'- aCACCGCGUGCAUUACACGCGGAUACAu -3' miRNA: 3'- -GUGGCGCACGUAAUGUGCGCCUAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 228728 | 0.7 | 0.956742 |
Target: 5'- cCGCCGCG-GCGgauuucCGCGCGGGggACGg -3' miRNA: 3'- -GUGGCGCaCGUaau---GUGCGCCUa-UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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