Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1542 | 3' | -52.1 | NC_001347.2 | + | 104464 | 0.67 | 0.987565 |
Target: 5'- gGCCGCGUGCGaacuaauccUUACGC-CGGugACGa -3' miRNA: 3'- gUGGCGCACGU---------AAUGUGcGCCuaUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 98260 | 0.66 | 0.996438 |
Target: 5'- uCGCgCGUGUGCGgcgUAC-CGCuGAUACu -3' miRNA: 3'- -GUG-GCGCACGUa--AUGuGCGcCUAUGu -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 98049 | 0.68 | 0.979595 |
Target: 5'- aCGCCGCGgcgGCAgcgGC-CGCGGcuuccaucaucgugAUGCAa -3' miRNA: 3'- -GUGGCGCa--CGUaa-UGuGCGCC--------------UAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 82820 | 0.67 | 0.989015 |
Target: 5'- aACCGCGU-CGUga-GCGCGGcgGCu -3' miRNA: 3'- gUGGCGCAcGUAaugUGCGCCuaUGu -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 82517 | 0.67 | 0.985972 |
Target: 5'- gGCCaGCGcaGCGUaGCugGCGcGAUGCAc -3' miRNA: 3'- gUGG-CGCa-CGUAaUGugCGC-CUAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 82221 | 0.7 | 0.952844 |
Target: 5'- -uCCGCGguaUGCGUgaccACACGCGGcucGUGCAc -3' miRNA: 3'- guGGCGC---ACGUAa---UGUGCGCC---UAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 82168 | 0.71 | 0.907168 |
Target: 5'- aACCGCGacGCAauuuuuugUGCGCGUGGGUGCc -3' miRNA: 3'- gUGGCGCa-CGUa-------AUGUGCGCCUAUGu -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 79294 | 0.67 | 0.987565 |
Target: 5'- aGCCGCaaGUGCucgacuUUACgguGCGCGGcgACAa -3' miRNA: 3'- gUGGCG--CACGu-----AAUG---UGCGCCuaUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 77769 | 0.66 | 0.995165 |
Target: 5'- gGCCgaGCGggcGCAauuugUACGCGCGGccGUGCAg -3' miRNA: 3'- gUGG--CGCa--CGUa----AUGUGCGCC--UAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 74860 | 0.66 | 0.994402 |
Target: 5'- gGCCGCGcUGCAccACcucgGgGUGGAUGCGg -3' miRNA: 3'- gUGGCGC-ACGUaaUG----UgCGCCUAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 65152 | 0.67 | 0.987565 |
Target: 5'- gCGCCGCGcUGgAUgacggugAUGCGCGGcUACAg -3' miRNA: 3'- -GUGGCGC-ACgUAa------UGUGCGCCuAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 53739 | 0.73 | 0.866157 |
Target: 5'- aGCCGCGUGC------CGCGGGUGCGc -3' miRNA: 3'- gUGGCGCACGuaauguGCGCCUAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 48029 | 0.79 | 0.551571 |
Target: 5'- -uCCGCGUGUAaUGCACGCGGuGUGCu -3' miRNA: 3'- guGGCGCACGUaAUGUGCGCC-UAUGu -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 44120 | 0.69 | 0.967101 |
Target: 5'- aUACaCGCGUGCAUgcUGCAUggGUGGAUGg- -3' miRNA: 3'- -GUG-GCGCACGUA--AUGUG--CGCCUAUgu -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 40390 | 0.66 | 0.995841 |
Target: 5'- aCACCGCcgGUGCGggGC-CGCGuGGUGg- -3' miRNA: 3'- -GUGGCG--CACGUaaUGuGCGC-CUAUgu -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 39502 | 0.69 | 0.972947 |
Target: 5'- gGCCGCGaccaagggGCGggGgGCGCGGcgACAu -3' miRNA: 3'- gUGGCGCa-------CGUaaUgUGCGCCuaUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 38556 | 0.66 | 0.995841 |
Target: 5'- gGCCGUcaGCAgcgACGCG-GGGUGCGg -3' miRNA: 3'- gUGGCGcaCGUaa-UGUGCgCCUAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 37906 | 0.69 | 0.972122 |
Target: 5'- cCACUGCccGUGCggcucggcgcccacAgcgcgGCGCGCGGGUGCAg -3' miRNA: 3'- -GUGGCG--CACG--------------Uaa---UGUGCGCCUAUGU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 25353 | 0.66 | 0.995841 |
Target: 5'- uGCCGCGUgGCGcUGCAcaccuauggcgcCGUGGGUugGc -3' miRNA: 3'- gUGGCGCA-CGUaAUGU------------GCGCCUAugU- -5' |
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1542 | 3' | -52.1 | NC_001347.2 | + | 24343 | 0.69 | 0.963866 |
Target: 5'- gGCCGUGgugGCcgUGCugGgcUGGGUGCAu -3' miRNA: 3'- gUGGCGCa--CGuaAUGugC--GCCUAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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