miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1542 3' -52.1 NC_001347.2 + 221857 1.09 0.010058
Target:  5'- aCACCGCGUGCAUUACACGCGGAUACAu -3'
miRNA:   3'- -GUGGCGCACGUAAUGUGCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 48029 0.79 0.551571
Target:  5'- -uCCGCGUGUAaUGCACGCGGuGUGCu -3'
miRNA:   3'- guGGCGCACGUaAUGUGCGCC-UAUGu -5'
1542 3' -52.1 NC_001347.2 + 199232 0.75 0.762983
Target:  5'- uCACCGCGUGCGUgauuauccgACGCGUGaGAUcGCGc -3'
miRNA:   3'- -GUGGCGCACGUAa--------UGUGCGC-CUA-UGU- -5'
1542 3' -52.1 NC_001347.2 + 53739 0.73 0.866157
Target:  5'- aGCCGCGUGC------CGCGGGUGCGc -3'
miRNA:   3'- gUGGCGCACGuaauguGCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 813 0.71 0.907168
Target:  5'- aACCGCGUGCuc-GCugACGCGGGUuuGCu -3'
miRNA:   3'- gUGGCGCACGuaaUG--UGCGCCUA--UGu -5'
1542 3' -52.1 NC_001347.2 + 82168 0.71 0.907168
Target:  5'- aACCGCGacGCAauuuuuugUGCGCGUGGGUGCc -3'
miRNA:   3'- gUGGCGCa-CGUa-------AUGUGCGCCUAUGu -5'
1542 3' -52.1 NC_001347.2 + 193947 0.71 0.918988
Target:  5'- uCACCGCGUGCGgauuCucUGCGGcgACAc -3'
miRNA:   3'- -GUGGCGCACGUaau-Gu-GCGCCuaUGU- -5'
1542 3' -52.1 NC_001347.2 + 22502 0.71 0.92454
Target:  5'- uCACCGUGUGCAcggGCuuuUGCGGAgaaagGCGc -3'
miRNA:   3'- -GUGGCGCACGUaa-UGu--GCGCCUa----UGU- -5'
1542 3' -52.1 NC_001347.2 + 14537 0.71 0.929853
Target:  5'- uGCCGCGaGCcgUugACGCcguugGGAUACGc -3'
miRNA:   3'- gUGGCGCaCGuaAugUGCG-----CCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 158013 0.71 0.934925
Target:  5'- aGCUGCGgcgGUAggACACGCGGGcGCc -3'
miRNA:   3'- gUGGCGCa--CGUaaUGUGCGCCUaUGu -5'
1542 3' -52.1 NC_001347.2 + 172268 0.7 0.944355
Target:  5'- gCugCGCGUGCccguggugaAUUACGCGUGGuuggaGCAg -3'
miRNA:   3'- -GugGCGCACG---------UAAUGUGCGCCua---UGU- -5'
1542 3' -52.1 NC_001347.2 + 137463 0.7 0.944355
Target:  5'- cCGCgCGCGUGCGUgcGCGCGCGuGAcguaACAa -3'
miRNA:   3'- -GUG-GCGCACGUAa-UGUGCGC-CUa---UGU- -5'
1542 3' -52.1 NC_001347.2 + 82221 0.7 0.952844
Target:  5'- -uCCGCGguaUGCGUgaccACACGCGGcucGUGCAc -3'
miRNA:   3'- guGGCGC---ACGUAa---UGUGCGCC---UAUGU- -5'
1542 3' -52.1 NC_001347.2 + 228728 0.7 0.956742
Target:  5'- cCGCCGCG-GCGgauuucCGCGCGGGggACGg -3'
miRNA:   3'- -GUGGCGCaCGUaau---GUGCGCCUa-UGU- -5'
1542 3' -52.1 NC_001347.2 + 141322 0.69 0.960415
Target:  5'- cUACCGCGcggGCAaggGCaACGCGGGUAg- -3'
miRNA:   3'- -GUGGCGCa--CGUaa-UG-UGCGCCUAUgu -5'
1542 3' -52.1 NC_001347.2 + 24343 0.69 0.963866
Target:  5'- gGCCGUGgugGCcgUGCugGgcUGGGUGCAu -3'
miRNA:   3'- gUGGCGCa--CGuaAUGugC--GCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 44120 0.69 0.967101
Target:  5'- aUACaCGCGUGCAUgcUGCAUggGUGGAUGg- -3'
miRNA:   3'- -GUG-GCGCACGUA--AUGUG--CGCCUAUgu -5'
1542 3' -52.1 NC_001347.2 + 203905 0.69 0.970126
Target:  5'- cCGCCGCGUGCGgauagGCACcUGGAcuuCAa -3'
miRNA:   3'- -GUGGCGCACGUaa---UGUGcGCCUau-GU- -5'
1542 3' -52.1 NC_001347.2 + 37906 0.69 0.972122
Target:  5'- cCACUGCccGUGCggcucggcgcccacAgcgcgGCGCGCGGGUGCAg -3'
miRNA:   3'- -GUGGCG--CACG--------------Uaa---UGUGCGCCUAUGU- -5'
1542 3' -52.1 NC_001347.2 + 39502 0.69 0.972947
Target:  5'- gGCCGCGaccaagggGCGggGgGCGCGGcgACAu -3'
miRNA:   3'- gUGGCGCa-------CGUaaUgUGCGCCuaUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.