miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1542 5' -53.2 NC_001347.2 + 2432 0.66 0.99132
Target:  5'- -cUGgaCCGCGAGCagugggagcgGCCGCGCugGg- -3'
miRNA:   3'- gcACaaGGUGUUCG----------UGGCGUGugCag -5'
1542 5' -53.2 NC_001347.2 + 73166 0.66 0.99132
Target:  5'- -----cCCGCGAGCcgauCCGCAaACGUCg -3'
miRNA:   3'- gcacaaGGUGUUCGu---GGCGUgUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 112738 0.66 0.99132
Target:  5'- aCGUagUCCGCAAagugacGUGCCGCcaACugGUCg -3'
miRNA:   3'- -GCAcaAGGUGUU------CGUGGCG--UGugCAG- -5'
1542 5' -53.2 NC_001347.2 + 16250 0.66 0.988798
Target:  5'- ---aUUCUGCu-GCugUGCGCGCGUCa -3'
miRNA:   3'- gcacAAGGUGuuCGugGCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 161645 0.66 0.988658
Target:  5'- -aUGUcgacCCGCGGcguggacGCGCCGUugGCGUCg -3'
miRNA:   3'- gcACAa---GGUGUU-------CGUGGCGugUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 161929 0.66 0.988658
Target:  5'- aGUGUcuccagcggcuuuUCCAUcAGCGCC-UugGCGUCg -3'
miRNA:   3'- gCACA-------------AGGUGuUCGUGGcGugUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 114416 0.66 0.98734
Target:  5'- cCGUGUUCgAUGAaacgcGCGCCGC-C-CGUCu -3'
miRNA:   3'- -GCACAAGgUGUU-----CGUGGCGuGuGCAG- -5'
1542 5' -53.2 NC_001347.2 + 21244 0.66 0.98574
Target:  5'- cCGUGcccguUUUCAC-AGCAgCCGCGCuuGUCg -3'
miRNA:   3'- -GCAC-----AAGGUGuUCGU-GGCGUGugCAG- -5'
1542 5' -53.2 NC_001347.2 + 187937 0.66 0.98574
Target:  5'- aCGUGgacagcuucCCACAGuCGgCGCACACGUUu -3'
miRNA:   3'- -GCACaa-------GGUGUUcGUgGCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 179667 0.66 0.98574
Target:  5'- aCGUGUU--GCGGGCAauagCGCACACGa- -3'
miRNA:   3'- -GCACAAggUGUUCGUg---GCGUGUGCag -5'
1542 5' -53.2 NC_001347.2 + 146096 0.66 0.98574
Target:  5'- gGUGgUCUACAAGCGCaacaucguggCGCACACc-- -3'
miRNA:   3'- gCACaAGGUGUUCGUG----------GCGUGUGcag -5'
1542 5' -53.2 NC_001347.2 + 209926 0.66 0.98574
Target:  5'- uGUG-UCCAaccguGGCACCGUAgGCGg- -3'
miRNA:   3'- gCACaAGGUgu---UCGUGGCGUgUGCag -5'
1542 5' -53.2 NC_001347.2 + 25349 0.67 0.98399
Target:  5'- -cUGUUgCCGCGuGGCGCUGCACACc-- -3'
miRNA:   3'- gcACAA-GGUGU-UCGUGGCGUGUGcag -5'
1542 5' -53.2 NC_001347.2 + 77870 0.67 0.980007
Target:  5'- gGUGgccgagcgCCugG-GCGCCGUGCGCGUa -3'
miRNA:   3'- gCACaa------GGugUuCGUGGCGUGUGCAg -5'
1542 5' -53.2 NC_001347.2 + 48690 0.67 0.975329
Target:  5'- cCGUGccacCUGCGAGgACCGUACACG-Ca -3'
miRNA:   3'- -GCACaa--GGUGUUCgUGGCGUGUGCaG- -5'
1542 5' -53.2 NC_001347.2 + 123483 0.67 0.974821
Target:  5'- uGUGUUCCACuccaucacacCACCGC-CACGa- -3'
miRNA:   3'- gCACAAGGUGuuc-------GUGGCGuGUGCag -5'
1542 5' -53.2 NC_001347.2 + 224939 0.68 0.972711
Target:  5'- uGUGUUUCA--AGUuguUCGCAUACGUCg -3'
miRNA:   3'- gCACAAGGUguUCGu--GGCGUGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 222664 0.68 0.972711
Target:  5'- aGUGUUCCAUAAaaGCCGgGCGC-UCc -3'
miRNA:   3'- gCACAAGGUGUUcgUGGCgUGUGcAG- -5'
1542 5' -53.2 NC_001347.2 + 76347 0.68 0.969899
Target:  5'- --cGUUCUgaAUcAGCGCCGagaGCACGUCa -3'
miRNA:   3'- gcaCAAGG--UGuUCGUGGCg--UGUGCAG- -5'
1542 5' -53.2 NC_001347.2 + 183688 0.68 0.966885
Target:  5'- gCGUG---CGCAGGUcCCGCaACACGUCg -3'
miRNA:   3'- -GCACaagGUGUUCGuGGCG-UGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.