miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1543 3' -56.4 NC_001347.2 + 156948 0.81 0.236055
Target:  5'- -uUGGGCACCGUCAucgUGGUGGCGAGCGc -3'
miRNA:   3'- uuGCUCGUGGUAGU---GCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 158164 0.69 0.812261
Target:  5'- uGCGAGCGCCAUCugGaCGcGCGcuCGc -3'
miRNA:   3'- uUGCUCGUGGUAGugCcGC-CGCuuGU- -5'
1543 3' -56.4 NC_001347.2 + 159250 0.7 0.75836
Target:  5'- uGCGuaAGCACCGUgAUaGGCGGCGAGg- -3'
miRNA:   3'- uUGC--UCGUGGUAgUG-CCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 171029 0.67 0.901729
Target:  5'- gGAUGAGUACCuugaGUUGCGGCguuucugugucGGUGAACGu -3'
miRNA:   3'- -UUGCUCGUGG----UAGUGCCG-----------CCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 173526 0.68 0.875112
Target:  5'- cAGCG-GCAagucgCGUgGCGGCGGCGGugGu -3'
miRNA:   3'- -UUGCuCGUg----GUAgUGCCGCCGCUugU- -5'
1543 3' -56.4 NC_001347.2 + 173725 0.75 0.502979
Target:  5'- aAAUGAGCAgCgGUgGCGGCGGCGGugAu -3'
miRNA:   3'- -UUGCUCGU-GgUAgUGCCGCCGCUugU- -5'
1543 3' -56.4 NC_001347.2 + 180038 0.67 0.907832
Target:  5'- -uUGAGCAUaugUACuguGGCGGCGGGCAg -3'
miRNA:   3'- uuGCUCGUGguaGUG---CCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 182212 0.66 0.943728
Target:  5'- uGGCGGGCugCGUCGCcuucggugacgucGGUGGUGGc-- -3'
miRNA:   3'- -UUGCUCGugGUAGUG-------------CCGCCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 184737 0.7 0.794835
Target:  5'- gGACGuGGCACaguUCGCGGUGGCGcuCGu -3'
miRNA:   3'- -UUGC-UCGUGgu-AGUGCCGCCGCuuGU- -5'
1543 3' -56.4 NC_001347.2 + 185132 0.66 0.939664
Target:  5'- cGCGAGCAgCCGcCG-GGCGGCacGGGCAa -3'
miRNA:   3'- uUGCUCGU-GGUaGUgCCGCCG--CUUGU- -5'
1543 3' -56.4 NC_001347.2 + 192034 0.67 0.901106
Target:  5'- uGACGAGCGgCAgcggCGacgacggUGGCGGCGAcgACAc -3'
miRNA:   3'- -UUGCUCGUgGUa---GU-------GCCGCCGCU--UGU- -5'
1543 3' -56.4 NC_001347.2 + 193891 0.66 0.944169
Target:  5'- cGCGAGC-CCGUCAUGccGCugGGCGAAa- -3'
miRNA:   3'- uUGCUCGuGGUAGUGC--CG--CCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 193974 0.7 0.767661
Target:  5'- cACGGGCACCGUguaCGCGGCgcuGGUgGGGCAg -3'
miRNA:   3'- uUGCUCGUGGUA---GUGCCG---CCG-CUUGU- -5'
1543 3' -56.4 NC_001347.2 + 196439 0.67 0.895402
Target:  5'- cGGCGAucCGCCAccUCACGGCcGGCGAc-- -3'
miRNA:   3'- -UUGCUc-GUGGU--AGUGCCG-CCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 208432 0.67 0.907832
Target:  5'- uAGCGccgccuAGCGCCGUCAacucgaugcCGGCGGCu-GCAg -3'
miRNA:   3'- -UUGC------UCGUGGUAGU---------GCCGCCGcuUGU- -5'
1543 3' -56.4 NC_001347.2 + 214684 1.06 0.005594
Target:  5'- cAACGAGCACCAUCACGGCGGCGAACAg -3'
miRNA:   3'- -UUGCUCGUGGUAGUGCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 226968 0.71 0.720169
Target:  5'- --aGAGacCACCuUCcCGGCGGCGGACAc -3'
miRNA:   3'- uugCUC--GUGGuAGuGCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 228600 0.66 0.924779
Target:  5'- cAGCGAG-GCCGUCGCGuuGGCGcgccAACAg -3'
miRNA:   3'- -UUGCUCgUGGUAGUGCcgCCGC----UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.