miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1543 3' -56.4 NC_001347.2 + 153237 0.66 0.939664
Target:  5'- cGCGGGCGCgCGUCggccggcgACGGCGGUucGCc -3'
miRNA:   3'- uUGCUCGUG-GUAG--------UGCCGCCGcuUGu -5'
1543 3' -56.4 NC_001347.2 + 152167 0.66 0.924779
Target:  5'- uAACGuGCugucgcCCGUCuuuccCGGCGGCGAAa- -3'
miRNA:   3'- -UUGCuCGu-----GGUAGu----GCCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 140898 0.66 0.944169
Target:  5'- --aGAGCAgCcgCGacgaGGUGGCGGGCGc -3'
miRNA:   3'- uugCUCGUgGuaGUg---CCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 140622 0.7 0.785907
Target:  5'- -cCGAGCgACgGUCugGGUGGCGGuCGu -3'
miRNA:   3'- uuGCUCG-UGgUAGugCCGCCGCUuGU- -5'
1543 3' -56.4 NC_001347.2 + 139449 0.67 0.901729
Target:  5'- cACGGuGCgACUG-CACGGCGGCGAGg- -3'
miRNA:   3'- uUGCU-CG-UGGUaGUGCCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 139325 0.69 0.812261
Target:  5'- uGGCG-GCGuuGUgCGCGGCGGUGGGCu -3'
miRNA:   3'- -UUGCuCGUggUA-GUGCCGCCGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 136198 0.7 0.785907
Target:  5'- cGCGGacuGCGCCGg-GgGGCGGCGGGCAc -3'
miRNA:   3'- uUGCU---CGUGGUagUgCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 129271 0.87 0.095989
Target:  5'- cGGCGAaccGCACCAUCACGGCGGCGAu-- -3'
miRNA:   3'- -UUGCU---CGUGGUAGUGCCGCCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 110512 0.68 0.860536
Target:  5'- --aGAGcCAgCggCGCGGCGGCGAAgAa -3'
miRNA:   3'- uugCUC-GUgGuaGUGCCGCCGCUUgU- -5'
1543 3' -56.4 NC_001347.2 + 109448 0.68 0.867926
Target:  5'- -cCGAGCGCaagacgccccgCGUCAcCGGCGGCGGc-- -3'
miRNA:   3'- uuGCUCGUG-----------GUAGU-GCCGCCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 108589 0.7 0.748951
Target:  5'- cAACGuGCACCAcuaccCGuCGGCGGcCGAGCGc -3'
miRNA:   3'- -UUGCuCGUGGUa----GU-GCCGCC-GCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 106225 0.7 0.776846
Target:  5'- cACGAGCcagaCGagGCGGCGGCGGugGc -3'
miRNA:   3'- uUGCUCGug--GUagUGCCGCCGCUugU- -5'
1543 3' -56.4 NC_001347.2 + 105956 0.67 0.901729
Target:  5'- cGCGAGCGCa---GCGuCGGCGAGCc -3'
miRNA:   3'- uUGCUCGUGguagUGCcGCCGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 99980 0.67 0.901729
Target:  5'- aAGCGaAGCGCCAUCAUGaCG-CGGGCGc -3'
miRNA:   3'- -UUGC-UCGUGGUAGUGCcGCcGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 96975 0.68 0.856007
Target:  5'- cGGCGcAGCACCAcguugacaaggucguUCuccucgacgcGCGGCGGCGGAgGa -3'
miRNA:   3'- -UUGC-UCGUGGU---------------AG----------UGCCGCCGCUUgU- -5'
1543 3' -56.4 NC_001347.2 + 93203 0.68 0.860536
Target:  5'- -cCGAGCGCUcgCGCuGGCGaCGAGCu -3'
miRNA:   3'- uuGCUCGUGGuaGUG-CCGCcGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 89548 0.66 0.92997
Target:  5'- aGGCGGGCACC-UCGCGccccgagaaGCGGCcGcGCAc -3'
miRNA:   3'- -UUGCUCGUGGuAGUGC---------CGCCG-CuUGU- -5'
1543 3' -56.4 NC_001347.2 + 88600 0.67 0.919359
Target:  5'- -cUGGGCgACCugaGCGGCGGCGGccuGCGc -3'
miRNA:   3'- uuGCUCG-UGGuagUGCCGCCGCU---UGU- -5'
1543 3' -56.4 NC_001347.2 + 79062 0.66 0.92997
Target:  5'- cGCGucGGCGCCAaaugagcCGCGaaGCGGCGGGCGg -3'
miRNA:   3'- uUGC--UCGUGGUa------GUGC--CGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 75409 0.7 0.776846
Target:  5'- gAGCG-GCgGCCGUgGCGGCGGC-AGCGg -3'
miRNA:   3'- -UUGCuCG-UGGUAgUGCCGCCGcUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.