miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1543 3' -56.4 NC_001347.2 + 88600 0.67 0.919359
Target:  5'- -cUGGGCgACCugaGCGGCGGCGGccuGCGc -3'
miRNA:   3'- uuGCUCG-UGGuagUGCCGCCGCU---UGU- -5'
1543 3' -56.4 NC_001347.2 + 66157 0.67 0.919359
Target:  5'- uGCGAGUACCugAUCgaccgACGGCGGCa---- -3'
miRNA:   3'- uUGCUCGUGG--UAG-----UGCCGCCGcuugu -5'
1543 3' -56.4 NC_001347.2 + 1925 0.67 0.913709
Target:  5'- cGCGGuGCuGCCcgCGCGGUGGCuGGGCu -3'
miRNA:   3'- uUGCU-CG-UGGuaGUGCCGCCG-CUUGu -5'
1543 3' -56.4 NC_001347.2 + 66575 0.67 0.913709
Target:  5'- gAACGAGgGCCcUCGcCGGCGGCcguugccGGCAa -3'
miRNA:   3'- -UUGCUCgUGGuAGU-GCCGCCGc------UUGU- -5'
1543 3' -56.4 NC_001347.2 + 180038 0.67 0.907832
Target:  5'- -uUGAGCAUaugUACuguGGCGGCGGGCAg -3'
miRNA:   3'- uuGCUCGUGguaGUG---CCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 208432 0.67 0.907832
Target:  5'- uAGCGccgccuAGCGCCGUCAacucgaugcCGGCGGCu-GCAg -3'
miRNA:   3'- -UUGC------UCGUGGUAGU---------GCCGCCGcuUGU- -5'
1543 3' -56.4 NC_001347.2 + 99980 0.67 0.901729
Target:  5'- aAGCGaAGCGCCAUCAUGaCG-CGGGCGc -3'
miRNA:   3'- -UUGC-UCGUGGUAGUGCcGCcGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 105956 0.67 0.901729
Target:  5'- cGCGAGCGCa---GCGuCGGCGAGCc -3'
miRNA:   3'- uUGCUCGUGguagUGCcGCCGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 171029 0.67 0.901729
Target:  5'- gGAUGAGUACCuugaGUUGCGGCguuucugugucGGUGAACGu -3'
miRNA:   3'- -UUGCUCGUGG----UAGUGCCG-----------CCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 139449 0.67 0.901729
Target:  5'- cACGGuGCgACUG-CACGGCGGCGAGg- -3'
miRNA:   3'- uUGCU-CG-UGGUaGUGCCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 192034 0.67 0.901106
Target:  5'- uGACGAGCGgCAgcggCGacgacggUGGCGGCGAcgACAc -3'
miRNA:   3'- -UUGCUCGUgGUa---GU-------GCCGCCGCU--UGU- -5'
1543 3' -56.4 NC_001347.2 + 196439 0.67 0.895402
Target:  5'- cGGCGAucCGCCAccUCACGGCcGGCGAc-- -3'
miRNA:   3'- -UUGCUc-GUGGU--AGUGCCG-CCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 2305 0.68 0.88209
Target:  5'- gGACGGGCACguguaccCGCuGGCGGCGGAg- -3'
miRNA:   3'- -UUGCUCGUGgua----GUG-CCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 65714 0.68 0.88209
Target:  5'- cGCGA-CACgGUgGCGGCGGUGGAgGg -3'
miRNA:   3'- uUGCUcGUGgUAgUGCCGCCGCUUgU- -5'
1543 3' -56.4 NC_001347.2 + 173526 0.68 0.875112
Target:  5'- cAGCG-GCAagucgCGUgGCGGCGGCGGugGu -3'
miRNA:   3'- -UUGCuCGUg----GUAgUGCCGCCGCUugU- -5'
1543 3' -56.4 NC_001347.2 + 109448 0.68 0.867926
Target:  5'- -cCGAGCGCaagacgccccgCGUCAcCGGCGGCGGc-- -3'
miRNA:   3'- uuGCUCGUG-----------GUAGU-GCCGCCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 93203 0.68 0.860536
Target:  5'- -cCGAGCGCUcgCGCuGGCGaCGAGCu -3'
miRNA:   3'- uuGCUCGUGGuaGUG-CCGCcGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 110512 0.68 0.860536
Target:  5'- --aGAGcCAgCggCGCGGCGGCGAAgAa -3'
miRNA:   3'- uugCUC-GUgGuaGUGCCGCCGCUUgU- -5'
1543 3' -56.4 NC_001347.2 + 96975 0.68 0.856007
Target:  5'- cGGCGcAGCACCAcguugacaaggucguUCuccucgacgcGCGGCGGCGGAgGa -3'
miRNA:   3'- -UUGC-UCGUGGU---------------AG----------UGCCGCCGCUUgU- -5'
1543 3' -56.4 NC_001347.2 + 158164 0.69 0.812261
Target:  5'- uGCGAGCGCCAUCugGaCGcGCGcuCGc -3'
miRNA:   3'- uUGCUCGUGGUAGugCcGC-CGCuuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.