miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15436 5' -61.2 NC_003930.1 + 5743 0.66 0.103867
Target:  5'- gAGCACACccgccgcgaucagaGGGCuaaCACGGGaccaguuugaCGCCGUAAGa -3'
miRNA:   3'- -UCGUGUG--------------UCCG---GUGCCC----------GCGGCGUUU- -5'
15436 5' -61.2 NC_003930.1 + 6986 0.71 0.039079
Target:  5'- uGGCGCACAaguacgcgguGGCCAUGGGgucgGCCGCu-- -3'
miRNA:   3'- -UCGUGUGU----------CCGGUGCCCg---CGGCGuuu -5'
15436 5' -61.2 NC_003930.1 + 5615 0.79 0.008159
Target:  5'- cGCACACugcGGCUAUGGGCGCUGCu-- -3'
miRNA:   3'- uCGUGUGu--CCGGUGCCCGCGGCGuuu -5'
15436 5' -61.2 NC_003930.1 + 10335 1.05 0.000037
Target:  5'- gAGCACACAGGCCACGGGCGCCGCAAAu -3'
miRNA:   3'- -UCGUGUGUCCGGUGCCCGCGGCGUUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.