Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15437 | 5' | -52.7 | NC_003930.1 | + | 3275 | 0.67 | 0.332495 |
Target: 5'- uGGA-UGCCGUCGCUACUcUCGugUgGGGCu -3' miRNA: 3'- -CCUgACGGCAGUGGUGA-AGU--GgUUCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 7930 | 0.67 | 0.332495 |
Target: 5'- aGGACaaguacaGCCGUaccgGCCGCg-CACUAAGCg -3' miRNA: 3'- -CCUGa------CGGCAg---UGGUGaaGUGGUUCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 8795 | 0.67 | 0.341764 |
Target: 5'- aGGACUGCUG-CAUUACUgcugaACCAgagaaGGCc -3' miRNA: 3'- -CCUGACGGCaGUGGUGAag---UGGU-----UCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 8870 | 0.67 | 0.370679 |
Target: 5'- gGGACcuacucauUGCUGUCACCACcugUgGCUccGCc -3' miRNA: 3'- -CCUG--------ACGGCAGUGGUGa--AgUGGuuCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 5365 | 0.68 | 0.323411 |
Target: 5'- cGGCUGCCGgccuaagcugccUCACgGCggccugCGCUggGCg -3' miRNA: 3'- cCUGACGGC------------AGUGgUGaa----GUGGuuCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 6372 | 0.68 | 0.314514 |
Target: 5'- cGAUUGCUGUguugaCGCUcucgaACUUCACCAcGCa -3' miRNA: 3'- cCUGACGGCA-----GUGG-----UGAAGUGGUuCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 9090 | 0.68 | 0.28894 |
Target: 5'- aGGACgugGUCGcUGCCACUgcUCACCAccucgucgauGGCu -3' miRNA: 3'- -CCUGa--CGGCaGUGGUGA--AGUGGU----------UCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 1693 | 0.69 | 0.272815 |
Target: 5'- aGACaUGCCGUCGCCgGCUUCcuCCucGUc -3' miRNA: 3'- cCUG-ACGGCAGUGG-UGAAGu-GGuuCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 5355 | 0.75 | 0.101733 |
Target: 5'- uGGCUGCCaguGUCGCCGCgagUCACaCAgccAGCa -3' miRNA: 3'- cCUGACGG---CAGUGGUGa--AGUG-GU---UCG- -5' |
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15437 | 5' | -52.7 | NC_003930.1 | + | 10919 | 1.15 | 0.000079 |
Target: 5'- uGGACUGCCGUCACCACUUCACCAAGCg -3' miRNA: 3'- -CCUGACGGCAGUGGUGAAGUGGUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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