Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1544 | 5' | -58.1 | NC_001347.2 | + | 148622 | 0.66 | 0.917024 |
Target: 5'- gGUCGCGg-GUGGCCGGCGUcagcGUUCg -3' miRNA: 3'- gCGGCGCagUACUGGCUGCGa---CGAGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 14283 | 0.66 | 0.917024 |
Target: 5'- gCGCUGCaGUUAUG-CCGcCGgaGCUCc -3' miRNA: 3'- -GCGGCG-CAGUACuGGCuGCgaCGAGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 194490 | 0.66 | 0.911414 |
Target: 5'- cCGCUGUG-C-UGGCCGcCGCUGCa-- -3' miRNA: 3'- -GCGGCGCaGuACUGGCuGCGACGaga -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 82221 | 0.66 | 0.899545 |
Target: 5'- -uCCGCGguaugCGUGACCacACGCgGCUCg -3' miRNA: 3'- gcGGCGCa----GUACUGGc-UGCGaCGAGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 40564 | 0.66 | 0.899545 |
Target: 5'- uGCCuGUGUCGUu-UCGGCGCUGCg-- -3' miRNA: 3'- gCGG-CGCAGUAcuGGCUGCGACGaga -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 192650 | 0.66 | 0.893291 |
Target: 5'- aCGCUGCGUCGguuucUGcgcGgCGACaGCUGCUUUg -3' miRNA: 3'- -GCGGCGCAGU-----AC---UgGCUG-CGACGAGA- -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 151319 | 0.68 | 0.836057 |
Target: 5'- uGuCCGCuuUCGUGGCCuGACGCcgcagGCUCUg -3' miRNA: 3'- gC-GGCGc-AGUACUGG-CUGCGa----CGAGA- -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 75772 | 0.68 | 0.836057 |
Target: 5'- aCGCCGUcucGUCGUuGCCGcCGgUGCUCc -3' miRNA: 3'- -GCGGCG---CAGUAcUGGCuGCgACGAGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 74849 | 0.68 | 0.819935 |
Target: 5'- cCGCCGCGaaA-GGCCG-CGCUGCa-- -3' miRNA: 3'- -GCGGCGCagUaCUGGCuGCGACGaga -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 63053 | 0.67 | 0.858951 |
Target: 5'- gGCgGCGUCAUGGgUGGCGgaGgaCUg -3' miRNA: 3'- gCGgCGCAGUACUgGCUGCgaCgaGA- -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 201158 | 0.67 | 0.858951 |
Target: 5'- aCGCCaCGa-GUGACgaCGACGCUGCUUg -3' miRNA: 3'- -GCGGcGCagUACUG--GCUGCGACGAGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 193185 | 0.67 | 0.8515 |
Target: 5'- gGCCGCGUC---GCaaACGCUGCUUg -3' miRNA: 3'- gCGGCGCAGuacUGgcUGCGACGAGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 153267 | 0.67 | 0.866214 |
Target: 5'- uCGCCGUGguuguUGGCCGACGUaGCg-- -3' miRNA: 3'- -GCGGCGCagu--ACUGGCUGCGaCGaga -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 2629 | 0.67 | 0.866214 |
Target: 5'- aCGCCGC------GCCGACGCUcaaGCUCUg -3' miRNA: 3'- -GCGGCGcaguacUGGCUGCGA---CGAGA- -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 53673 | 0.67 | 0.873285 |
Target: 5'- cCG-CGCGUCAUGAgucccaaagacCUGACGCcGUUCUu -3' miRNA: 3'- -GCgGCGCAGUACU-----------GGCUGCGaCGAGA- -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 1902 | 0.67 | 0.873285 |
Target: 5'- uGCUGCGgc-UGGCUGGCGCUGggCg -3' miRNA: 3'- gCGGCGCaguACUGGCUGCGACgaGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 16377 | 0.66 | 0.886827 |
Target: 5'- uGCUGCGUCAcggucaUGacGCCGACGCguugGC-Cg -3' miRNA: 3'- gCGGCGCAGU------AC--UGGCUGCGa---CGaGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 222426 | 0.66 | 0.898311 |
Target: 5'- uCGCCGCGUCucguucgucgaGGCCGAuCGaCUGC-Cg -3' miRNA: 3'- -GCGGCGCAGua---------CUGGCU-GC-GACGaGa -5' |
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1544 | 5' | -58.1 | NC_001347.2 | + | 86755 | 0.66 | 0.917024 |
Target: 5'- cCGUCGC-UCGUGGCCaacaGACGCUccacGUUCUu -3' miRNA: 3'- -GCGGCGcAGUACUGG----CUGCGA----CGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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