miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1544 5' -58.1 NC_001347.2 + 153267 0.67 0.866214
Target:  5'- uCGCCGUGguuguUGGCCGACGUaGCg-- -3'
miRNA:   3'- -GCGGCGCagu--ACUGGCUGCGaCGaga -5'
1544 5' -58.1 NC_001347.2 + 2629 0.67 0.866214
Target:  5'- aCGCCGC------GCCGACGCUcaaGCUCUg -3'
miRNA:   3'- -GCGGCGcaguacUGGCUGCGA---CGAGA- -5'
1544 5' -58.1 NC_001347.2 + 201158 0.67 0.858951
Target:  5'- aCGCCaCGa-GUGACgaCGACGCUGCUUg -3'
miRNA:   3'- -GCGGcGCagUACUG--GCUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 63053 0.67 0.858951
Target:  5'- gGCgGCGUCAUGGgUGGCGgaGgaCUg -3'
miRNA:   3'- gCGgCGCAGUACUgGCUGCgaCgaGA- -5'
1544 5' -58.1 NC_001347.2 + 18410 0.67 0.8515
Target:  5'- aCGCCGgGUCGc-ACCGAgguggagcCGUUGCUCa -3'
miRNA:   3'- -GCGGCgCAGUacUGGCU--------GCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 193185 0.67 0.8515
Target:  5'- gGCCGCGUC---GCaaACGCUGCUUg -3'
miRNA:   3'- gCGGCGCAGuacUGgcUGCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 125835 0.67 0.843867
Target:  5'- aGCUGCaUCGUG-CCGGCGCgacgaugacGCUCg -3'
miRNA:   3'- gCGGCGcAGUACuGGCUGCGa--------CGAGa -5'
1544 5' -58.1 NC_001347.2 + 151319 0.68 0.836057
Target:  5'- uGuCCGCuuUCGUGGCCuGACGCcgcagGCUCUg -3'
miRNA:   3'- gC-GGCGc-AGUACUGG-CUGCGa----CGAGA- -5'
1544 5' -58.1 NC_001347.2 + 156990 0.68 0.836057
Target:  5'- gCGaCCGCaGUCugGGCCGugGCUGCcCg -3'
miRNA:   3'- -GC-GGCG-CAGuaCUGGCugCGACGaGa -5'
1544 5' -58.1 NC_001347.2 + 75772 0.68 0.836057
Target:  5'- aCGCCGUcucGUCGUuGCCGcCGgUGCUCc -3'
miRNA:   3'- -GCGGCG---CAGUAcUGGCuGCgACGAGa -5'
1544 5' -58.1 NC_001347.2 + 193070 0.68 0.819935
Target:  5'- uCGUCGCGgacugccggCAUGuCCGGCcgucgcaaggGCUGCUCg -3'
miRNA:   3'- -GCGGCGCa--------GUACuGGCUG----------CGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 74849 0.68 0.819935
Target:  5'- cCGCCGCGaaA-GGCCG-CGCUGCa-- -3'
miRNA:   3'- -GCGGCGCagUaCUGGCuGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 173120 0.68 0.811636
Target:  5'- -uCgGCGUgGUGGCCGAC-CUGCUUa -3'
miRNA:   3'- gcGgCGCAgUACUGGCUGcGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 161528 0.68 0.811636
Target:  5'- uCGCCuaGCGUC-UGACCcaaGCGCUGCa-- -3'
miRNA:   3'- -GCGG--CGCAGuACUGGc--UGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 103719 0.69 0.794596
Target:  5'- uGCUGCGUCGUGACggcgccuaaGACGUUGaUCg -3'
miRNA:   3'- gCGGCGCAGUACUGg--------CUGCGACgAGa -5'
1544 5' -58.1 NC_001347.2 + 116674 0.69 0.785872
Target:  5'- cCGCCGcCGUCGccaccuCCGGCGCUGUccUCg -3'
miRNA:   3'- -GCGGC-GCAGUacu---GGCUGCGACG--AGa -5'
1544 5' -58.1 NC_001347.2 + 85659 0.69 0.77702
Target:  5'- cCGCCGCGUCGUG-CCucCGCagcacGUUCUg -3'
miRNA:   3'- -GCGGCGCAGUACuGGcuGCGa----CGAGA- -5'
1544 5' -58.1 NC_001347.2 + 174429 0.69 0.76805
Target:  5'- uCGUCGCGUCAgcGGCaCGGUGCUGCgUCUc -3'
miRNA:   3'- -GCGGCGCAGUa-CUG-GCUGCGACG-AGA- -5'
1544 5' -58.1 NC_001347.2 + 38669 0.69 0.749784
Target:  5'- gCGCCacCGUCGUGccggcccaccGCCGGCGCaGCUCc -3'
miRNA:   3'- -GCGGc-GCAGUAC----------UGGCUGCGaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 167423 0.7 0.740505
Target:  5'- aGCCGa-UCAacgugGAUCGAUGCUGCUCc -3'
miRNA:   3'- gCGGCgcAGUa----CUGGCUGCGACGAGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.