miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15441 5' -54.6 NC_003930.1 + 11421 0.66 0.291903
Target:  5'- gGGCGCCGCCAcgaucaccuacgAgGGCcACG--AGGCCg -3'
miRNA:   3'- -UUGCGGCGGU------------UgUCGuUGCcaUCUGG- -5'
15441 5' -54.6 NC_003930.1 + 5695 0.67 0.267827
Target:  5'- cAGCGUCGCCGgcucggugagACAGCccAGCGGgccGCCu -3'
miRNA:   3'- -UUGCGGCGGU----------UGUCG--UUGCCaucUGG- -5'
15441 5' -54.6 NC_003930.1 + 5583 0.67 0.245381
Target:  5'- cGAUGCCGCCGACA-CAGCuGgcGcCCu -3'
miRNA:   3'- -UUGCGGCGGUUGUcGUUGcCauCuGG- -5'
15441 5' -54.6 NC_003930.1 + 5323 0.68 0.217905
Target:  5'- --gGCCGCCGugaGGCAGCu-UAGGCCg -3'
miRNA:   3'- uugCGGCGGUug-UCGUUGccAUCUGG- -5'
15441 5' -54.6 NC_003930.1 + 9174 0.68 0.21146
Target:  5'- cACGCCGCagaCAACAcGCGACucGUGGugCg -3'
miRNA:   3'- uUGCGGCG---GUUGU-CGUUGc-CAUCugG- -5'
15441 5' -54.6 NC_003930.1 + 1664 0.69 0.187302
Target:  5'- --aGCCGgCGACGGCAugucuGauGUGGACCu -3'
miRNA:   3'- uugCGGCgGUUGUCGU-----UgcCAUCUGG- -5'
15441 5' -54.6 NC_003930.1 + 5947 0.7 0.160548
Target:  5'- cGGCGCCGCCGugagaacucggcGCagagGGCAACGGgacGGCUc -3'
miRNA:   3'- -UUGCGGCGGU------------UG----UCGUUGCCau-CUGG- -5'
15441 5' -54.6 NC_003930.1 + 1345 0.7 0.155628
Target:  5'- gAGCGUaugacaaaCGCCAGCAGCAuaccuucuACcGUAGGCCc -3'
miRNA:   3'- -UUGCG--------GCGGUUGUCGU--------UGcCAUCUGG- -5'
15441 5' -54.6 NC_003930.1 + 8048 0.75 0.063271
Target:  5'- -uUGCCgGCCA--GGCAAgGGUGGACCg -3'
miRNA:   3'- uuGCGG-CGGUugUCGUUgCCAUCUGG- -5'
15441 5' -54.6 NC_003930.1 + 4346 1.09 0.000126
Target:  5'- cAACGCCGCCAACAGCAACGGUAGACCc -3'
miRNA:   3'- -UUGCGGCGGUUGUCGUUGCCAUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.