Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 25 | 0.7 | 0.737725 |
Target: 5'- --cCGCACCGgCGGuguuuuGGGUGUGUCGGGg -3' miRNA: 3'- cuuGCGUGGUgGCC------UCCGCGUAGCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 1789 | 0.67 | 0.86022 |
Target: 5'- cGAugGUACUGCUGGGcgcguggcaggagcuGGCGCAguaCGAGc -3' miRNA: 3'- -CUugCGUGGUGGCCU---------------CCGCGUa--GCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 2102 | 0.68 | 0.842017 |
Target: 5'- ---gGCGCCGCCGGcGGGgGCG-CGAu -3' miRNA: 3'- cuugCGUGGUGGCC-UCCgCGUaGCUc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 2484 | 0.69 | 0.792268 |
Target: 5'- -cGCGCGCCgcGCUGuGGGCGCG-CGAGc -3' miRNA: 3'- cuUGCGUGG--UGGCcUCCGCGUaGCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 24018 | 0.68 | 0.826067 |
Target: 5'- -cACGCGCCACCGGGGccaccaaCGCGgccuccauuUCGGGc -3' miRNA: 3'- cuUGCGUGGUGGCCUCc------GCGU---------AGCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 39781 | 0.66 | 0.921461 |
Target: 5'- -cGCGUACCACUGGA-GCGCAc---- -3' miRNA: 3'- cuUGCGUGGUGGCCUcCGCGUagcuc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 40468 | 0.68 | 0.842017 |
Target: 5'- -uGCGCACUGCCGGu-GCGUGUCGu- -3' miRNA: 3'- cuUGCGUGGUGGCCucCGCGUAGCuc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 67878 | 0.66 | 0.898313 |
Target: 5'- --gUGCGCUACgGGAGGCuCA-CGAGu -3' miRNA: 3'- cuuGCGUGGUGgCCUCCGcGUaGCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 68720 | 0.66 | 0.916003 |
Target: 5'- cGAGCGCAacgcUCGUCGGAGGC-CGUgGAGc -3' miRNA: 3'- -CUUGCGU----GGUGGCCUCCGcGUAgCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 73723 | 0.73 | 0.58195 |
Target: 5'- cGGGCacCGCCGCCGGAGGCGCGg---- -3' miRNA: 3'- -CUUGc-GUGGUGGCCUCCGCGUagcuc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 77935 | 0.67 | 0.885447 |
Target: 5'- -uGCGCucggaGCgGCUGGAGGCGCAgcugcgCGGc -3' miRNA: 3'- cuUGCG-----UGgUGGCCUCCGCGUa-----GCUc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 80209 | 0.66 | 0.916003 |
Target: 5'- cGAGCGCAcCCACUcGucGCGCuccUCGAGc -3' miRNA: 3'- -CUUGCGU-GGUGGcCucCGCGu--AGCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 84594 | 0.66 | 0.926698 |
Target: 5'- cGAGCGCACCGCguuuuucuUGGAGcCGUcgUGGGu -3' miRNA: 3'- -CUUGCGUGGUG--------GCCUCcGCGuaGCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 88352 | 0.68 | 0.826067 |
Target: 5'- --cCGuCGCCGCUGGcGGCGCugccgCGAGa -3' miRNA: 3'- cuuGC-GUGGUGGCCuCCGCGua---GCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 92262 | 0.68 | 0.826067 |
Target: 5'- cGugGcCGCCGCCauGAGGCGCGUCa-- -3' miRNA: 3'- cUugC-GUGGUGGc-CUCCGCGUAGcuc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 93557 | 0.76 | 0.416507 |
Target: 5'- uGACGUACCACagcacaCGGAGGCGCAcgCGAu -3' miRNA: 3'- cUUGCGUGGUG------GCCUCCGCGUa-GCUc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 98292 | 0.67 | 0.867486 |
Target: 5'- cAACGCGCCcagcACCucgacuaacacuuuGAGGCGCGUgCGAGg -3' miRNA: 3'- cUUGCGUGG----UGGc-------------CUCCGCGUA-GCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 100946 | 0.66 | 0.89769 |
Target: 5'- -cACGcCGCCGCCGcGAuggagaacuggucGGCGC-UCGAGc -3' miRNA: 3'- cuUGC-GUGGUGGC-CU-------------CCGCGuAGCUC- -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 114618 | 0.69 | 0.783465 |
Target: 5'- -cACGCGCCACUGGGGuGCcgaaGCGUaCGAa -3' miRNA: 3'- cuUGCGUGGUGGCCUC-CG----CGUA-GCUc -5' |
|||||||
1545 | 3' | -57.7 | NC_001347.2 | + | 125281 | 0.68 | 0.848967 |
Target: 5'- uGAACG-ACCGCCGGuGGCGUcaguggcgcaaccGUCGcAGc -3' miRNA: 3'- -CUUGCgUGGUGGCCuCCGCG-------------UAGC-UC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home