miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1546 3' -57.8 NC_001347.2 + 37277 0.66 0.920556
Target:  5'- gGUGGG-C-CGggGCCCguuuugcauaAGCGCGgAGGu -3'
miRNA:   3'- -CACCCaGaGCaaCGGG----------UCGUGCgUCC- -5'
1546 3' -57.8 NC_001347.2 + 142429 0.66 0.915056
Target:  5'- aGUGGcGUCggcgCGgcGUCCGGCGuCGgGGGu -3'
miRNA:   3'- -CACC-CAGa---GCaaCGGGUCGU-GCgUCC- -5'
1546 3' -57.8 NC_001347.2 + 188622 0.66 0.909337
Target:  5'- -aGGGUC-CGUcgGgaCAGCGCGUGGGa -3'
miRNA:   3'- caCCCAGaGCAa-CggGUCGUGCGUCC- -5'
1546 3' -57.8 NC_001347.2 + 151859 0.66 0.897243
Target:  5'- -cGGGUCUuuuacguucugaCGgcGCCCgguguccggacGGCGcCGCAGGg -3'
miRNA:   3'- caCCCAGA------------GCaaCGGG-----------UCGU-GCGUCC- -5'
1546 3' -57.8 NC_001347.2 + 170940 0.66 0.890875
Target:  5'- cGUGGGUUUCGaucgcgUGCCgCAGUACGa--- -3'
miRNA:   3'- -CACCCAGAGCa-----ACGG-GUCGUGCgucc -5'
1546 3' -57.8 NC_001347.2 + 192246 0.67 0.884295
Target:  5'- cGUcGGcCUCGccgGCCCgAGCGCGcCGGGg -3'
miRNA:   3'- -CAcCCaGAGCaa-CGGG-UCGUGC-GUCC- -5'
1546 3' -57.8 NC_001347.2 + 173641 0.67 0.884295
Target:  5'- aUGGGUCUCGgcGUCUgggaggagguGGCgGCGguGGc -3'
miRNA:   3'- cACCCAGAGCaaCGGG----------UCG-UGCguCC- -5'
1546 3' -57.8 NC_001347.2 + 99121 0.67 0.863332
Target:  5'- uGUGGGUCaUGUUcuugggaaGCCgCGGCGCGCGu- -3'
miRNA:   3'- -CACCCAGaGCAA--------CGG-GUCGUGCGUcc -5'
1546 3' -57.8 NC_001347.2 + 85592 0.67 0.858926
Target:  5'- -gGGGUCUCGcguucaccgcgaaacUccacGCCCGGCAC-CGGGu -3'
miRNA:   3'- caCCCAGAGC---------------Aa---CGGGUCGUGcGUCC- -5'
1546 3' -57.8 NC_001347.2 + 170144 0.69 0.781849
Target:  5'- -aGcGGUCcCGccgUGCCCAGuCGCGguGGa -3'
miRNA:   3'- caC-CCAGaGCa--ACGGGUC-GUGCguCC- -5'
1546 3' -57.8 NC_001347.2 + 148635 0.71 0.68802
Target:  5'- -cGGcGUCagCGUUcgcaGCCCGGCuccGCGCAGGg -3'
miRNA:   3'- caCC-CAGa-GCAA----CGGGUCG---UGCGUCC- -5'
1546 3' -57.8 NC_001347.2 + 161172 0.72 0.619276
Target:  5'- gGUcGGUCUCGUguguUGCCggaAGCACGCuAGGa -3'
miRNA:   3'- -CAcCCAGAGCA----ACGGg--UCGUGCG-UCC- -5'
1546 3' -57.8 NC_001347.2 + 37914 0.73 0.530837
Target:  5'- cGUGcGG-CUCGgcGCCCacagcgcGGCGCGCGGGu -3'
miRNA:   3'- -CAC-CCaGAGCaaCGGG-------UCGUGCGUCC- -5'
1546 3' -57.8 NC_001347.2 + 208747 1.09 0.002963
Target:  5'- uGUGGGUCUCGUUGCCCAGCACGCAGGu -3'
miRNA:   3'- -CACCCAGAGCAACGGGUCGUGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.